Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14760

Experiment: Glucose (C) and L-Glutamine (N); with TAPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS14755 and PFLU_RS14760 are separated by 200 nucleotidesPFLU_RS14760 and PFLU_RS14765 are separated by 12 nucleotides PFLU_RS14755: PFLU_RS14755 - bestrophin, at 3,300,896 to 3,301,789 _RS14755 PFLU_RS14760: PFLU_RS14760 - SDR family NAD(P)-dependent oxidoreductase, at 3,301,990 to 3,302,757 _RS14760 PFLU_RS14765: PFLU_RS14765 - acetyl-CoA C-acyltransferase, at 3,302,770 to 3,303,954 _RS14765 Position (kb) 3301 3302 3303Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3301.071 kb on + strand, within PFLU_RS14755at 3301.072 kb on - strand, within PFLU_RS14755at 3301.072 kb on - strand, within PFLU_RS14755at 3301.072 kb on - strand, within PFLU_RS14755at 3301.152 kb on + strand, within PFLU_RS14755at 3301.152 kb on + strand, within PFLU_RS14755at 3301.152 kb on + strand, within PFLU_RS14755at 3301.152 kb on + strand, within PFLU_RS14755at 3301.152 kb on + strand, within PFLU_RS14755at 3301.152 kb on + strand, within PFLU_RS14755at 3301.152 kb on + strand, within PFLU_RS14755at 3301.152 kb on + strand, within PFLU_RS14755at 3301.152 kb on + strand, within PFLU_RS14755at 3301.152 kb on + strand, within PFLU_RS14755at 3301.153 kb on - strand, within PFLU_RS14755at 3301.153 kb on - strand, within PFLU_RS14755at 3301.153 kb on - strand, within PFLU_RS14755at 3301.153 kb on - strand, within PFLU_RS14755at 3301.153 kb on - strand, within PFLU_RS14755at 3301.153 kb on - strand, within PFLU_RS14755at 3301.153 kb on - strand, within PFLU_RS14755at 3301.153 kb on - strand, within PFLU_RS14755at 3301.179 kb on + strand, within PFLU_RS14755at 3301.179 kb on + strand, within PFLU_RS14755at 3301.180 kb on - strand, within PFLU_RS14755at 3301.180 kb on - strand, within PFLU_RS14755at 3301.382 kb on + strand, within PFLU_RS14755at 3301.563 kb on + strand, within PFLU_RS14755at 3301.563 kb on + strand, within PFLU_RS14755at 3301.563 kb on + strand, within PFLU_RS14755at 3301.563 kb on + strand, within PFLU_RS14755at 3301.563 kb on + strand, within PFLU_RS14755at 3301.564 kb on - strand, within PFLU_RS14755at 3301.564 kb on - strand, within PFLU_RS14755at 3301.564 kb on - strand, within PFLU_RS14755at 3301.647 kb on + strand, within PFLU_RS14755at 3301.647 kb on + strand, within PFLU_RS14755at 3301.648 kb on - strand, within PFLU_RS14755at 3301.648 kb on - strand, within PFLU_RS14755at 3301.784 kb on + strandat 3301.784 kb on + strandat 3301.785 kb on - strandat 3301.785 kb on - strandat 3301.785 kb on - strandat 3301.829 kb on - strandat 3301.829 kb on - strandat 3301.955 kb on + strandat 3301.955 kb on + strandat 3302.093 kb on + strand, within PFLU_RS14760at 3302.470 kb on + strand, within PFLU_RS14760at 3302.471 kb on - strand, within PFLU_RS14760at 3302.503 kb on - strand, within PFLU_RS14760at 3302.665 kb on + strand, within PFLU_RS14760at 3302.666 kb on - strand, within PFLU_RS14760at 3302.666 kb on - strand, within PFLU_RS14760at 3302.781 kb on + strandat 3302.781 kb on + strandat 3302.781 kb on + strandat 3302.782 kb on - strandat 3302.939 kb on + strand, within PFLU_RS14765at 3302.940 kb on - strand, within PFLU_RS14765at 3303.139 kb on + strand, within PFLU_RS14765at 3303.139 kb on + strand, within PFLU_RS14765at 3303.139 kb on + strand, within PFLU_RS14765at 3303.139 kb on + strand, within PFLU_RS14765at 3303.139 kb on + strand, within PFLU_RS14765at 3303.139 kb on + strand, within PFLU_RS14765at 3303.139 kb on + strand, within PFLU_RS14765at 3303.140 kb on - strand, within PFLU_RS14765at 3303.140 kb on - strand, within PFLU_RS14765at 3303.140 kb on - strand, within PFLU_RS14765at 3303.140 kb on - strand, within PFLU_RS14765at 3303.140 kb on - strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.198 kb on + strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.199 kb on - strand, within PFLU_RS14765at 3303.226 kb on + strand, within PFLU_RS14765at 3303.226 kb on + strand, within PFLU_RS14765at 3303.226 kb on + strand, within PFLU_RS14765at 3303.226 kb on + strand, within PFLU_RS14765at 3303.227 kb on - strand, within PFLU_RS14765at 3303.346 kb on - strand, within PFLU_RS14765

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) and L-Glutamine (N); with TAPS
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3,301,071 + PFLU_RS14755 0.20 -0.2
3,301,072 - PFLU_RS14755 0.20 -1.5
3,301,072 - PFLU_RS14755 0.20 +0.8
3,301,072 - PFLU_RS14755 0.20 +0.2
3,301,152 + PFLU_RS14755 0.29 +1.2
3,301,152 + PFLU_RS14755 0.29 +0.8
3,301,152 + PFLU_RS14755 0.29 +1.1
3,301,152 + PFLU_RS14755 0.29 +1.0
3,301,152 + PFLU_RS14755 0.29 -0.8
3,301,152 + PFLU_RS14755 0.29 +0.8
3,301,152 + PFLU_RS14755 0.29 +0.4
3,301,152 + PFLU_RS14755 0.29 +1.5
3,301,152 + PFLU_RS14755 0.29 +0.0
3,301,152 + PFLU_RS14755 0.29 -0.2
3,301,153 - PFLU_RS14755 0.29 -0.3
3,301,153 - PFLU_RS14755 0.29 -1.4
3,301,153 - PFLU_RS14755 0.29 +0.7
3,301,153 - PFLU_RS14755 0.29 +1.4
3,301,153 - PFLU_RS14755 0.29 +0.4
3,301,153 - PFLU_RS14755 0.29 +2.1
3,301,153 - PFLU_RS14755 0.29 +0.8
3,301,153 - PFLU_RS14755 0.29 +1.4
3,301,179 + PFLU_RS14755 0.32 +1.8
3,301,179 + PFLU_RS14755 0.32 +0.6
3,301,180 - PFLU_RS14755 0.32 -0.4
3,301,180 - PFLU_RS14755 0.32 -2.8
3,301,382 + PFLU_RS14755 0.54 +1.0
3,301,563 + PFLU_RS14755 0.75 -1.0
3,301,563 + PFLU_RS14755 0.75 -1.2
3,301,563 + PFLU_RS14755 0.75 +1.0
3,301,563 + PFLU_RS14755 0.75 +0.4
3,301,563 + PFLU_RS14755 0.75 +0.2
3,301,564 - PFLU_RS14755 0.75 -0.2
3,301,564 - PFLU_RS14755 0.75 -1.3
3,301,564 - PFLU_RS14755 0.75 +1.4
3,301,647 + PFLU_RS14755 0.84 +1.2
3,301,647 + PFLU_RS14755 0.84 +0.1
3,301,648 - PFLU_RS14755 0.84 -1.2
3,301,648 - PFLU_RS14755 0.84 -0.9
3,301,784 + -0.2
3,301,784 + -0.5
3,301,785 - -0.5
3,301,785 - +0.6
3,301,785 - +1.6
3,301,829 - +0.1
3,301,829 - +0.8
3,301,955 + -1.5
3,301,955 + +0.5
3,302,093 + PFLU_RS14760 0.13 -0.2
3,302,470 + PFLU_RS14760 0.62 -1.3
3,302,471 - PFLU_RS14760 0.63 -2.3
3,302,503 - PFLU_RS14760 0.67 -0.0
3,302,665 + PFLU_RS14760 0.88 -1.5
3,302,666 - PFLU_RS14760 0.88 +0.0
3,302,666 - PFLU_RS14760 0.88 +1.6
3,302,781 + -0.6
3,302,781 + +0.6
3,302,781 + +0.0
3,302,782 - +1.4
3,302,939 + PFLU_RS14765 0.14 +0.0
3,302,940 - PFLU_RS14765 0.14 -0.6
3,303,139 + PFLU_RS14765 0.31 -0.4
3,303,139 + PFLU_RS14765 0.31 +0.9
3,303,139 + PFLU_RS14765 0.31 -1.2
3,303,139 + PFLU_RS14765 0.31 -0.4
3,303,139 + PFLU_RS14765 0.31 -0.9
3,303,139 + PFLU_RS14765 0.31 +1.0
3,303,139 + PFLU_RS14765 0.31 -0.7
3,303,140 - PFLU_RS14765 0.31 +0.4
3,303,140 - PFLU_RS14765 0.31 -1.0
3,303,140 - PFLU_RS14765 0.31 -0.6
3,303,140 - PFLU_RS14765 0.31 -0.4
3,303,140 - PFLU_RS14765 0.31 -0.6
3,303,198 + PFLU_RS14765 0.36 +0.4
3,303,198 + PFLU_RS14765 0.36 +0.6
3,303,198 + PFLU_RS14765 0.36 +0.7
3,303,198 + PFLU_RS14765 0.36 +1.1
3,303,198 + PFLU_RS14765 0.36 -2.2
3,303,198 + PFLU_RS14765 0.36 +1.9
3,303,198 + PFLU_RS14765 0.36 +0.7
3,303,198 + PFLU_RS14765 0.36 -1.3
3,303,198 + PFLU_RS14765 0.36 -1.0
3,303,198 + PFLU_RS14765 0.36 +0.5
3,303,198 + PFLU_RS14765 0.36 +0.6
3,303,198 + PFLU_RS14765 0.36 +1.0
3,303,198 + PFLU_RS14765 0.36 -1.2
3,303,198 + PFLU_RS14765 0.36 -1.8
3,303,198 + PFLU_RS14765 0.36 +0.7
3,303,198 + PFLU_RS14765 0.36 -1.2
3,303,198 + PFLU_RS14765 0.36 +0.6
3,303,198 + PFLU_RS14765 0.36 -0.0
3,303,198 + PFLU_RS14765 0.36 +1.4
3,303,198 + PFLU_RS14765 0.36 -2.2
3,303,198 + PFLU_RS14765 0.36 -1.2
3,303,198 + PFLU_RS14765 0.36 +0.6
3,303,198 + PFLU_RS14765 0.36 -1.2
3,303,198 + PFLU_RS14765 0.36 +2.4
3,303,198 + PFLU_RS14765 0.36 +0.6
3,303,198 + PFLU_RS14765 0.36 +1.8
3,303,198 + PFLU_RS14765 0.36 -0.6
3,303,198 + PFLU_RS14765 0.36 -1.6
3,303,198 + PFLU_RS14765 0.36 -1.0
3,303,198 + PFLU_RS14765 0.36 -2.1
3,303,198 + PFLU_RS14765 0.36 +1.4
3,303,198 + PFLU_RS14765 0.36 -0.2
3,303,198 + PFLU_RS14765 0.36 -2.1
3,303,198 + PFLU_RS14765 0.36 -3.2
3,303,199 - PFLU_RS14765 0.36 +0.1
3,303,199 - PFLU_RS14765 0.36 -1.0
3,303,199 - PFLU_RS14765 0.36 +0.8
3,303,199 - PFLU_RS14765 0.36 +0.6
3,303,199 - PFLU_RS14765 0.36 +0.7
3,303,199 - PFLU_RS14765 0.36 +1.1
3,303,199 - PFLU_RS14765 0.36 +0.8
3,303,199 - PFLU_RS14765 0.36 +0.1
3,303,199 - PFLU_RS14765 0.36 +0.9
3,303,199 - PFLU_RS14765 0.36 -0.8
3,303,199 - PFLU_RS14765 0.36 -0.6
3,303,199 - PFLU_RS14765 0.36 -0.2
3,303,199 - PFLU_RS14765 0.36 +1.4
3,303,199 - PFLU_RS14765 0.36 +0.0
3,303,199 - PFLU_RS14765 0.36 -1.3
3,303,199 - PFLU_RS14765 0.36 +0.7
3,303,199 - PFLU_RS14765 0.36 +0.9
3,303,199 - PFLU_RS14765 0.36 -2.0
3,303,199 - PFLU_RS14765 0.36 -1.2
3,303,199 - PFLU_RS14765 0.36 -1.1
3,303,199 - PFLU_RS14765 0.36 +1.8
3,303,199 - PFLU_RS14765 0.36 +0.2
3,303,199 - PFLU_RS14765 0.36 -0.2
3,303,199 - PFLU_RS14765 0.36 -0.8
3,303,199 - PFLU_RS14765 0.36 -1.8
3,303,199 - PFLU_RS14765 0.36 -2.1
3,303,199 - PFLU_RS14765 0.36 +0.2
3,303,199 - PFLU_RS14765 0.36 -0.7
3,303,199 - PFLU_RS14765 0.36 -0.6
3,303,226 + PFLU_RS14765 0.38 +0.9
3,303,226 + PFLU_RS14765 0.38 +0.2
3,303,226 + PFLU_RS14765 0.38 -1.0
3,303,226 + PFLU_RS14765 0.38 +1.2
3,303,227 - PFLU_RS14765 0.39 +1.4
3,303,346 - PFLU_RS14765 0.49 -1.7

Or see this region's nucleotide sequence