Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS23135

Experiment: Glucose (C) and Betaine (N); with TAPS; with chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS23125 and PFLU_RS23130 overlap by 4 nucleotidesPFLU_RS23130 and PFLU_RS23135 are separated by 18 nucleotidesPFLU_RS23135 and PFLU_RS23140 are separated by 137 nucleotidesPFLU_RS23140 and PFLU_RS23145 are separated by 80 nucleotides PFLU_RS23125: PFLU_RS23125 - HAMP domain-containing protein, at 5,196,491 to 5,197,837 _RS23125 PFLU_RS23130: PFLU_RS23130 - response regulator transcription factor, at 5,197,834 to 5,198,511 _RS23130 PFLU_RS23135: PFLU_RS23135 - hypothetical protein, at 5,198,530 to 5,198,838 _RS23135 PFLU_RS23140: PFLU_RS23140 - 4'-phosphopantetheinyl transferase superfamily protein, at 5,198,976 to 5,199,692 _RS23140 PFLU_RS23145: PFLU_RS23145 - HAMP domain-containing protein, at 5,199,773 to 5,201,383 _RS23145 Position (kb) 5198 5199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5197.531 kb on + strand, within PFLU_RS23125at 5197.531 kb on + strand, within PFLU_RS23125at 5197.531 kb on + strand, within PFLU_RS23125at 5197.532 kb on - strand, within PFLU_RS23125at 5197.562 kb on + strand, within PFLU_RS23125at 5197.562 kb on + strand, within PFLU_RS23125at 5197.563 kb on - strand, within PFLU_RS23125at 5197.584 kb on + strand, within PFLU_RS23125at 5197.584 kb on + strand, within PFLU_RS23125at 5197.584 kb on + strand, within PFLU_RS23125at 5197.584 kb on + strand, within PFLU_RS23125at 5197.584 kb on + strand, within PFLU_RS23125at 5197.584 kb on + strand, within PFLU_RS23125at 5197.584 kb on + strand, within PFLU_RS23125at 5197.584 kb on + strand, within PFLU_RS23125at 5197.584 kb on + strand, within PFLU_RS23125at 5197.585 kb on - strand, within PFLU_RS23125at 5197.585 kb on - strand, within PFLU_RS23125at 5197.585 kb on - strand, within PFLU_RS23125at 5197.585 kb on - strand, within PFLU_RS23125at 5197.585 kb on - strand, within PFLU_RS23125at 5197.585 kb on - strand, within PFLU_RS23125at 5197.585 kb on - strand, within PFLU_RS23125at 5197.585 kb on - strand, within PFLU_RS23125at 5197.585 kb on - strand, within PFLU_RS23125at 5197.585 kb on - strand, within PFLU_RS23125at 5197.585 kb on - strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.588 kb on + strand, within PFLU_RS23125at 5197.589 kb on - strand, within PFLU_RS23125at 5197.589 kb on - strand, within PFLU_RS23125at 5197.589 kb on - strand, within PFLU_RS23125at 5197.589 kb on - strand, within PFLU_RS23125at 5197.589 kb on - strand, within PFLU_RS23125at 5197.589 kb on - strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.590 kb on + strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.591 kb on - strand, within PFLU_RS23125at 5197.777 kb on + strandat 5197.777 kb on + strandat 5197.777 kb on + strandat 5197.777 kb on + strandat 5197.777 kb on + strandat 5197.778 kb on - strandat 5197.778 kb on - strandat 5197.778 kb on - strandat 5197.778 kb on - strandat 5197.823 kb on + strandat 5197.860 kb on - strandat 5197.860 kb on - strandat 5197.976 kb on + strand, within PFLU_RS23130at 5197.977 kb on - strand, within PFLU_RS23130at 5198.033 kb on + strand, within PFLU_RS23130at 5198.033 kb on + strand, within PFLU_RS23130at 5198.034 kb on - strand, within PFLU_RS23130at 5198.034 kb on - strand, within PFLU_RS23130at 5198.034 kb on - strand, within PFLU_RS23130at 5198.049 kb on - strand, within PFLU_RS23130at 5198.049 kb on - strand, within PFLU_RS23130at 5198.055 kb on - strand, within PFLU_RS23130at 5198.055 kb on - strand, within PFLU_RS23130at 5198.055 kb on - strand, within PFLU_RS23130at 5198.219 kb on + strand, within PFLU_RS23130at 5198.219 kb on + strand, within PFLU_RS23130at 5198.219 kb on + strand, within PFLU_RS23130at 5198.219 kb on + strand, within PFLU_RS23130at 5198.219 kb on + strand, within PFLU_RS23130at 5198.219 kb on + strand, within PFLU_RS23130at 5198.219 kb on + strand, within PFLU_RS23130at 5198.219 kb on + strand, within PFLU_RS23130at 5198.219 kb on + strand, within PFLU_RS23130at 5198.219 kb on + strand, within PFLU_RS23130at 5198.219 kb on + strand, within PFLU_RS23130at 5198.219 kb on + strand, within PFLU_RS23130at 5198.220 kb on - strand, within PFLU_RS23130at 5198.220 kb on - strand, within PFLU_RS23130at 5198.220 kb on - strand, within PFLU_RS23130at 5198.311 kb on - strand, within PFLU_RS23130at 5198.400 kb on - strand, within PFLU_RS23130at 5198.511 kb on + strandat 5198.550 kb on + strandat 5198.550 kb on + strandat 5198.550 kb on + strandat 5198.551 kb on - strandat 5198.551 kb on - strandat 5198.551 kb on - strandat 5198.551 kb on - strandat 5198.555 kb on + strandat 5198.556 kb on - strandat 5198.586 kb on + strand, within PFLU_RS23135at 5198.586 kb on + strand, within PFLU_RS23135at 5198.586 kb on + strand, within PFLU_RS23135at 5198.586 kb on + strand, within PFLU_RS23135at 5198.586 kb on + strand, within PFLU_RS23135at 5198.586 kb on + strand, within PFLU_RS23135at 5198.587 kb on - strand, within PFLU_RS23135at 5198.587 kb on - strand, within PFLU_RS23135at 5198.587 kb on - strand, within PFLU_RS23135at 5198.587 kb on - strand, within PFLU_RS23135at 5198.587 kb on - strand, within PFLU_RS23135at 5198.590 kb on - strand, within PFLU_RS23135at 5198.590 kb on - strand, within PFLU_RS23135at 5198.590 kb on - strand, within PFLU_RS23135at 5198.618 kb on + strand, within PFLU_RS23135at 5198.618 kb on + strand, within PFLU_RS23135at 5198.619 kb on - strand, within PFLU_RS23135at 5198.844 kb on + strandat 5198.844 kb on + strandat 5198.844 kb on + strandat 5198.844 kb on + strandat 5198.844 kb on + strandat 5198.845 kb on - strandat 5198.845 kb on - strandat 5198.845 kb on - strandat 5198.877 kb on + strandat 5198.877 kb on + strandat 5198.878 kb on - strandat 5198.878 kb on - strandat 5198.878 kb on - strandat 5198.878 kb on - strandat 5198.967 kb on + strandat 5198.968 kb on - strandat 5199.781 kb on + strandat 5199.781 kb on + strandat 5199.781 kb on + strandat 5199.782 kb on - strandat 5199.782 kb on - strandat 5199.782 kb on - strandat 5199.829 kb on + strandat 5199.829 kb on + strandat 5199.830 kb on - strandat 5199.830 kb on - strandat 5199.830 kb on - strandat 5199.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) and Betaine (N); with TAPS; with chloride
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5,197,531 + PFLU_RS23125 0.77 -0.9
5,197,531 + PFLU_RS23125 0.77 -1.3
5,197,531 + PFLU_RS23125 0.77 -1.9
5,197,532 - PFLU_RS23125 0.77 -0.7
5,197,562 + PFLU_RS23125 0.80 -1.2
5,197,562 + PFLU_RS23125 0.80 -0.1
5,197,563 - PFLU_RS23125 0.80 -1.1
5,197,584 + PFLU_RS23125 0.81 -1.4
5,197,584 + PFLU_RS23125 0.81 -0.8
5,197,584 + PFLU_RS23125 0.81 -1.5
5,197,584 + PFLU_RS23125 0.81 -0.2
5,197,584 + PFLU_RS23125 0.81 -2.2
5,197,584 + PFLU_RS23125 0.81 -0.4
5,197,584 + PFLU_RS23125 0.81 -1.7
5,197,584 + PFLU_RS23125 0.81 -0.6
5,197,584 + PFLU_RS23125 0.81 -0.3
5,197,585 - PFLU_RS23125 0.81 -1.1
5,197,585 - PFLU_RS23125 0.81 -0.5
5,197,585 - PFLU_RS23125 0.81 -2.1
5,197,585 - PFLU_RS23125 0.81 +0.4
5,197,585 - PFLU_RS23125 0.81 -1.3
5,197,585 - PFLU_RS23125 0.81 -1.8
5,197,585 - PFLU_RS23125 0.81 -0.9
5,197,585 - PFLU_RS23125 0.81 -3.1
5,197,585 - PFLU_RS23125 0.81 -2.6
5,197,585 - PFLU_RS23125 0.81 -1.8
5,197,585 - PFLU_RS23125 0.81 +0.3
5,197,588 + PFLU_RS23125 0.81 +0.5
5,197,588 + PFLU_RS23125 0.81 -0.8
5,197,588 + PFLU_RS23125 0.81 +0.1
5,197,588 + PFLU_RS23125 0.81 -2.1
5,197,588 + PFLU_RS23125 0.81 -1.8
5,197,588 + PFLU_RS23125 0.81 -2.3
5,197,588 + PFLU_RS23125 0.81 -2.3
5,197,588 + PFLU_RS23125 0.81 -1.4
5,197,588 + PFLU_RS23125 0.81 -0.5
5,197,588 + PFLU_RS23125 0.81 +0.2
5,197,588 + PFLU_RS23125 0.81 -1.3
5,197,588 + PFLU_RS23125 0.81 -1.5
5,197,588 + PFLU_RS23125 0.81 -1.8
5,197,588 + PFLU_RS23125 0.81 -0.1
5,197,588 + PFLU_RS23125 0.81 -1.7
5,197,588 + PFLU_RS23125 0.81 -0.6
5,197,588 + PFLU_RS23125 0.81 -2.6
5,197,588 + PFLU_RS23125 0.81 -0.3
5,197,589 - PFLU_RS23125 0.82 -1.5
5,197,589 - PFLU_RS23125 0.82 -0.7
5,197,589 - PFLU_RS23125 0.82 -0.6
5,197,589 - PFLU_RS23125 0.82 -2.5
5,197,589 - PFLU_RS23125 0.82 -1.8
5,197,589 - PFLU_RS23125 0.82 -1.7
5,197,590 + PFLU_RS23125 0.82 +0.4
5,197,590 + PFLU_RS23125 0.82 -0.6
5,197,590 + PFLU_RS23125 0.82 +0.1
5,197,590 + PFLU_RS23125 0.82 -1.2
5,197,590 + PFLU_RS23125 0.82 +0.7
5,197,590 + PFLU_RS23125 0.82 -1.4
5,197,590 + PFLU_RS23125 0.82 -1.4
5,197,590 + PFLU_RS23125 0.82 -0.7
5,197,590 + PFLU_RS23125 0.82 -1.1
5,197,590 + PFLU_RS23125 0.82 -0.7
5,197,590 + PFLU_RS23125 0.82 +0.6
5,197,590 + PFLU_RS23125 0.82 -0.4
5,197,590 + PFLU_RS23125 0.82 -1.5
5,197,590 + PFLU_RS23125 0.82 -3.3
5,197,590 + PFLU_RS23125 0.82 +0.3
5,197,591 - PFLU_RS23125 0.82 -1.2
5,197,591 - PFLU_RS23125 0.82 -1.4
5,197,591 - PFLU_RS23125 0.82 +0.7
5,197,591 - PFLU_RS23125 0.82 -3.0
5,197,591 - PFLU_RS23125 0.82 +0.5
5,197,591 - PFLU_RS23125 0.82 -2.0
5,197,591 - PFLU_RS23125 0.82 +1.5
5,197,591 - PFLU_RS23125 0.82 -1.5
5,197,591 - PFLU_RS23125 0.82 -1.1
5,197,591 - PFLU_RS23125 0.82 -1.1
5,197,591 - PFLU_RS23125 0.82 -1.7
5,197,591 - PFLU_RS23125 0.82 +1.1
5,197,591 - PFLU_RS23125 0.82 -2.7
5,197,591 - PFLU_RS23125 0.82 -1.1
5,197,591 - PFLU_RS23125 0.82 -2.6
5,197,777 + -1.2
5,197,777 + +0.2
5,197,777 + -1.0
5,197,777 + -0.2
5,197,777 + -3.1
5,197,778 - -0.6
5,197,778 - -2.0
5,197,778 - -3.3
5,197,778 - -0.2
5,197,823 + +1.1
5,197,860 - -0.2
5,197,860 - -0.2
5,197,976 + PFLU_RS23130 0.21 -1.6
5,197,977 - PFLU_RS23130 0.21 -0.7
5,198,033 + PFLU_RS23130 0.29 -0.1
5,198,033 + PFLU_RS23130 0.29 -1.0
5,198,034 - PFLU_RS23130 0.29 +0.7
5,198,034 - PFLU_RS23130 0.29 -0.5
5,198,034 - PFLU_RS23130 0.29 -0.3
5,198,049 - PFLU_RS23130 0.32 -0.6
5,198,049 - PFLU_RS23130 0.32 +0.1
5,198,055 - PFLU_RS23130 0.33 -0.2
5,198,055 - PFLU_RS23130 0.33 -0.4
5,198,055 - PFLU_RS23130 0.33 -0.8
5,198,219 + PFLU_RS23130 0.57 -1.3
5,198,219 + PFLU_RS23130 0.57 -0.6
5,198,219 + PFLU_RS23130 0.57 -1.0
5,198,219 + PFLU_RS23130 0.57 -0.7
5,198,219 + PFLU_RS23130 0.57 +0.2
5,198,219 + PFLU_RS23130 0.57 -0.6
5,198,219 + PFLU_RS23130 0.57 -1.1
5,198,219 + PFLU_RS23130 0.57 -1.9
5,198,219 + PFLU_RS23130 0.57 +0.4
5,198,219 + PFLU_RS23130 0.57 -0.6
5,198,219 + PFLU_RS23130 0.57 -0.0
5,198,219 + PFLU_RS23130 0.57 -0.4
5,198,220 - PFLU_RS23130 0.57 +0.3
5,198,220 - PFLU_RS23130 0.57 -0.7
5,198,220 - PFLU_RS23130 0.57 -2.1
5,198,311 - PFLU_RS23130 0.70 +0.0
5,198,400 - PFLU_RS23130 0.83 -0.5
5,198,511 + +0.4
5,198,550 + -1.9
5,198,550 + -2.0
5,198,550 + -2.0
5,198,551 - -0.0
5,198,551 - +0.4
5,198,551 - -1.8
5,198,551 - -0.9
5,198,555 + -0.5
5,198,556 - -0.6
5,198,586 + PFLU_RS23135 0.18 -1.3
5,198,586 + PFLU_RS23135 0.18 -0.2
5,198,586 + PFLU_RS23135 0.18 +0.5
5,198,586 + PFLU_RS23135 0.18 -0.0
5,198,586 + PFLU_RS23135 0.18 +0.5
5,198,586 + PFLU_RS23135 0.18 +1.1
5,198,587 - PFLU_RS23135 0.18 +0.2
5,198,587 - PFLU_RS23135 0.18 -0.1
5,198,587 - PFLU_RS23135 0.18 -1.1
5,198,587 - PFLU_RS23135 0.18 -0.9
5,198,587 - PFLU_RS23135 0.18 +0.3
5,198,590 - PFLU_RS23135 0.19 -0.8
5,198,590 - PFLU_RS23135 0.19 +0.5
5,198,590 - PFLU_RS23135 0.19 -0.5
5,198,618 + PFLU_RS23135 0.28 -0.1
5,198,618 + PFLU_RS23135 0.28 -1.4
5,198,619 - PFLU_RS23135 0.29 -2.2
5,198,844 + -1.4
5,198,844 + -1.2
5,198,844 + +2.1
5,198,844 + -1.5
5,198,844 + -1.2
5,198,845 - -0.4
5,198,845 - -0.1
5,198,845 - -0.5
5,198,877 + +0.3
5,198,877 + +0.8
5,198,878 - -1.4
5,198,878 - +1.1
5,198,878 - -0.0
5,198,878 - -2.3
5,198,967 + +0.1
5,198,968 - +1.5
5,199,781 + +1.7
5,199,781 + +1.6
5,199,781 + -0.4
5,199,782 - -1.8
5,199,782 - -0.2
5,199,782 - +0.8
5,199,829 + -1.5
5,199,829 + +0.0
5,199,830 - -0.9
5,199,830 - -0.6
5,199,830 - -0.2
5,199,830 - -0.5

Or see this region's nucleotide sequence