Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS07355

Experiment: Glucose (C) and Betaine (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and Betaine (N); with TAPS; with chloride
1,635,477	+				+2.2
1,635,478	-				+1.5
1,635,478	-				+2.3
1,635,527	+				-0.3
1,635,527	+				+0.6
1,635,528	-				+0.7
1,635,528	-				-0.6
1,635,704	+				-1.5
1,635,704	+				+1.3
1,635,704	+				+0.9
1,635,704	+				+0.4
1,635,704	+				+3.0
1,635,704	+				+0.6
1,635,705	-				+2.0
1,635,705	-				-0.1
1,635,705	-				-0.1
1,635,705	-				-1.6
1,635,705	-				+0.1
1,635,705	-				-0.3
1,635,705	-				-0.8
1,635,705	-				-1.7
1,635,705	-				-0.0
1,635,782	-				-0.2
1,635,782	-				-0.6
1,635,800	+				-2.0
1,635,972	+		PFLU_RS07350	0.33	-1.6
1,635,972	+		PFLU_RS07350	0.33	-0.5
1,635,972	+		PFLU_RS07350	0.33	-1.3
1,635,972	+		PFLU_RS07350	0.33	+1.0
1,635,972	+		PFLU_RS07350	0.33	+1.8
1,635,973	-		PFLU_RS07350	0.33	+0.2
1,635,973	-		PFLU_RS07350	0.33	-0.7
1,635,973	-		PFLU_RS07350	0.33	+0.6
1,635,973	-		PFLU_RS07350	0.33	-1.3
1,635,979	+		PFLU_RS07350	0.34	-0.0
1,635,980	-		PFLU_RS07350	0.34	-0.6
1,635,980	-		PFLU_RS07350	0.34	-1.3
1,635,980	-		PFLU_RS07350	0.34	+0.2
1,636,174	+		PFLU_RS07350	0.61	-0.5
1,636,174	+		PFLU_RS07350	0.61	+0.1
1,636,175	-		PFLU_RS07350	0.61	-0.0
1,636,175	-		PFLU_RS07350	0.61	-1.6
1,636,178	+		PFLU_RS07350	0.62	-1.3
1,636,178	+		PFLU_RS07350	0.62	+0.4
1,636,178	+		PFLU_RS07350	0.62	-0.6
1,636,178	+		PFLU_RS07350	0.62	-1.4
1,636,178	+		PFLU_RS07350	0.62	-0.8
1,636,178	+		PFLU_RS07350	0.62	-3.3
1,636,179	-		PFLU_RS07350	0.62	-2.4
1,636,179	-		PFLU_RS07350	0.62	-1.6
1,636,179	-		PFLU_RS07350	0.62	+0.6
1,636,179	-		PFLU_RS07350	0.62	-0.3
1,636,179	-		PFLU_RS07350	0.62	-2.6
1,636,179	-		PFLU_RS07350	0.62	+0.2
1,636,441	+				-2.5
1,636,441	+				+0.9
1,636,442	-				-0.8
1,636,442	-				+0.5
1,636,461	-				+1.0
1,636,478	-				-0.0
1,636,487	+				-0.6
1,636,488	-				-2.0
1,636,488	-				+0.8
1,636,493	+				-2.2
1,636,493	+				+0.1
1,636,493	+				-1.1
1,636,493	+				-2.5
1,636,493	+				+1.2
1,636,494	-				+1.0
1,636,494	-				+1.4
1,636,494	-				-0.1
1,636,494	-				-0.8
1,636,543	+		PFLU_RS07355	0.12	-1.2
1,636,543	+		PFLU_RS07355	0.12	+1.4
1,636,543	+		PFLU_RS07355	0.12	+0.5
1,636,543	+		PFLU_RS07355	0.12	-0.8
1,636,544	-		PFLU_RS07355	0.12	+2.8
1,636,615	+		PFLU_RS07355	0.21	-2.2
1,636,615	+		PFLU_RS07355	0.21	+1.0
1,636,616	-		PFLU_RS07355	0.21	+0.4
1,636,682	+		PFLU_RS07355	0.29	+1.6
1,636,682	+		PFLU_RS07355	0.29	-0.3
1,636,682	+		PFLU_RS07355	0.29	+1.7
1,636,682	+		PFLU_RS07355	0.29	+0.3
1,636,683	-		PFLU_RS07355	0.30	+1.1
1,636,683	-		PFLU_RS07355	0.30	+3.3
1,636,683	-		PFLU_RS07355	0.30	+1.0
1,636,683	-		PFLU_RS07355	0.30	-1.4
1,636,921	+		PFLU_RS07355	0.60	+0.8
1,637,101	+		PFLU_RS07355	0.83	+0.6
1,637,101	+		PFLU_RS07355	0.83	-0.6
1,637,101	+		PFLU_RS07355	0.83	+0.0
1,637,102	-		PFLU_RS07355	0.83	-0.0
1,637,102	-		PFLU_RS07355	0.83	+0.2
1,637,102	-		PFLU_RS07355	0.83	+1.8
1,637,230	+				-0.5
1,637,230	+				+0.4
1,637,230	+				-1.1
1,637,230	+				-1.2
1,637,231	-				+0.5
1,637,231	-				-0.9
1,637,231	-				+1.1
1,637,236	+				-0.0
1,637,236	+				-0.5
1,637,237	-				-0.3
1,637,237	-				+0.4
1,637,237	-				+1.4
1,637,253	+				-0.6
1,637,253	+				-1.0
1,637,253	+				+0.5
1,637,253	+				+1.8
1,637,253	+				+1.8
1,637,253	+				-1.4
1,637,254	-				-0.6
1,637,254	-				+1.0
1,637,254	-				+3.0
1,637,254	-				-0.3
1,637,254	-				-1.5
1,637,254	-				+1.1
1,637,263	+				-2.3
1,637,264	-				-0.3
1,637,264	-				-2.0
1,637,281	+				+0.7
1,637,281	+				-0.8
1,637,282	-				+3.4
1,637,287	+				-1.6
1,637,287	+				+0.4
1,637,287	+				-2.2
1,637,287	+				-0.0
1,637,288	-				+1.4
1,637,288	-				+0.4
1,637,288	-				+0.8
1,637,288	-				-3.3
1,637,288	-				+0.6
1,637,288	-				-2.4
1,637,288	-				+0.8
1,637,332	+				-1.6
1,637,332	+				-1.3
1,637,332	+				+0.0
1,637,332	+				+0.2
1,637,332	+				-0.3
1,637,332	+				+3.2
1,637,332	+				-0.8
1,637,332	+				+0.7
1,637,332	+				-2.0
1,637,332	+				+0.2
1,637,332	+				+0.4
1,637,333	-				+1.4
1,637,333	-				+0.8
1,637,333	-				+1.3
1,637,333	-				+0.4
1,637,333	-				-0.7
1,637,333	-				+0.3
1,637,333	-				-1.3
1,637,333	-				+1.8
1,637,359	+				+1.7
1,637,359	+				+1.0
1,637,360	-				-1.6
1,637,360	-				+1.4
1,637,360	-				-0.4
1,637,360	-				-0.9
1,637,382	+				-1.8
1,637,383	-				+0.4
1,637,667	-		PFLU_RS07360	0.39	+0.6
1,637,667	-		PFLU_RS07360	0.39	-0.6
1,637,686	+		PFLU_RS07360	0.41	+0.7
1,637,686	+		PFLU_RS07360	0.41	+0.7
1,637,717	+		PFLU_RS07360	0.44	+1.7
1,637,717	+		PFLU_RS07360	0.44	+0.4
1,637,717	+		PFLU_RS07360	0.44	-2.0
1,637,718	-		PFLU_RS07360	0.44	-0.1
1,637,718	-		PFLU_RS07360	0.44	+0.7
1,637,822	+		PFLU_RS07360	0.55	+0.8
1,637,822	+		PFLU_RS07360	0.55	+1.7
1,637,822	+		PFLU_RS07360	0.55	+0.6
1,637,823	-		PFLU_RS07360	0.55	+0.7
1,637,823	-		PFLU_RS07360	0.55	+0.9
1,637,840	+		PFLU_RS07360	0.57	-0.6
1,637,840	+		PFLU_RS07360	0.57	-0.1
1,637,840	+		PFLU_RS07360	0.57	-1.5
1,637,841	-		PFLU_RS07360	0.57	-0.0
1,637,841	-		PFLU_RS07360	0.57	-1.2
1,637,841	-		PFLU_RS07360	0.57	-2.3
1,637,841	-		PFLU_RS07360	0.57	+1.9
1,637,987	+		PFLU_RS07360	0.73	-0.4
1,637,987	+		PFLU_RS07360	0.73	-0.2
1,637,987	+		PFLU_RS07360	0.73	-1.5
1,637,987	+		PFLU_RS07360	0.73	-3.7
1,637,987	+		PFLU_RS07360	0.73	-0.6
1,637,988	-		PFLU_RS07360	0.73	+0.8
1,637,988	-		PFLU_RS07360	0.73	+1.3
1,637,988	-		PFLU_RS07360	0.73	+0.7
1,637,988	-		PFLU_RS07360	0.73	+0.7
1,637,988	-		PFLU_RS07360	0.73	+2.0
1,637,988	-		PFLU_RS07360	0.73	+0.4
1,637,988	-		PFLU_RS07360	0.73	+1.0
1,638,133	-		PFLU_RS07360	0.89	-0.7
1,638,133	-		PFLU_RS07360	0.89	+0.4
1,638,133	-		PFLU_RS07360	0.89	+1.0
1,638,133	-		PFLU_RS07360	0.89	-1.0
1,638,133	-		PFLU_RS07360	0.89	+1.0