Experiment: Glucose (C) and Betaine (N); with TAPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02855 and PFLU_RS02860 are separated by 116 nucleotides PFLU_RS02860 and PFLU_RS02865 overlap by 4 nucleotides PFLU_RS02865 and PFLU_RS02870 are separated by 5 nucleotides PFLU_RS02870 and PFLU_RS02875 are separated by 9 nucleotides PFLU_RS02875 and PFLU_RS02880 are separated by 145 nucleotides
PFLU_RS02855: PFLU_RS02855 - urease subunit alpha, at 656,853 to 658,553
_RS02855
PFLU_RS02860: PFLU_RS02860 - urease subunit beta, at 658,670 to 658,975
_RS02860
PFLU_RS02865: PFLU_RS02865 - GNAT family N-acetyltransferase, at 658,972 to 659,505
_RS02865
PFLU_RS02870: PFLU_RS02870 - N-acetyltransferase, at 659,511 to 660,023
_RS02870
PFLU_RS02875: PFLU_RS02875 - urease subunit gamma, at 660,033 to 660,335
_RS02875
PFLU_RS02880: PFLU_RS02880 - urease accessory protein UreD, at 660,481 to 661,320
_RS02880
Position (kb) 658
659
660 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 658.519 kb on + strand at 658.519 kb on + strand at 658.519 kb on + strand at 658.519 kb on + strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.520 kb on - strand at 658.532 kb on - strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.570 kb on + strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.571 kb on - strand at 658.581 kb on + strand at 658.581 kb on + strand at 658.707 kb on - strand, within PFLU_RS02860 at 658.790 kb on - strand, within PFLU_RS02860 at 658.857 kb on + strand, within PFLU_RS02860 at 658.858 kb on - strand, within PFLU_RS02860 at 658.939 kb on + strand, within PFLU_RS02860 at 658.960 kb on - strand at 658.960 kb on - strand at 659.000 kb on + strand at 659.000 kb on + strand at 659.000 kb on + strand at 659.000 kb on + strand at 659.000 kb on + strand at 659.001 kb on - strand at 659.018 kb on + strand at 659.019 kb on - strand at 659.019 kb on - strand at 659.042 kb on + strand, within PFLU_RS02865 at 659.069 kb on + strand, within PFLU_RS02865 at 659.070 kb on - strand, within PFLU_RS02865 at 659.070 kb on - strand, within PFLU_RS02865 at 659.084 kb on + strand, within PFLU_RS02865 at 659.084 kb on + strand, within PFLU_RS02865 at 659.085 kb on - strand, within PFLU_RS02865 at 659.123 kb on + strand, within PFLU_RS02865 at 659.123 kb on + strand, within PFLU_RS02865 at 659.347 kb on + strand, within PFLU_RS02865 at 659.347 kb on + strand, within PFLU_RS02865 at 659.361 kb on - strand, within PFLU_RS02865 at 659.361 kb on - strand, within PFLU_RS02865 at 659.556 kb on - strand at 659.556 kb on - strand at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.771 kb on - strand, within PFLU_RS02870 at 659.771 kb on - strand, within PFLU_RS02870 at 659.771 kb on - strand, within PFLU_RS02870 at 659.771 kb on - strand, within PFLU_RS02870 at 659.792 kb on - strand, within PFLU_RS02870 at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.242 kb on - strand, within PFLU_RS02875 at 660.283 kb on - strand, within PFLU_RS02875 at 660.283 kb on - strand, within PFLU_RS02875 at 660.355 kb on + strand at 660.355 kb on + strand at 660.355 kb on + strand at 660.355 kb on + strand at 660.355 kb on + strand at 660.356 kb on - strand at 660.356 kb on - strand at 660.363 kb on + strand at 660.364 kb on - strand at 660.364 kb on - strand at 660.367 kb on + strand at 660.367 kb on + strand at 660.367 kb on + strand at 660.368 kb on - strand at 660.368 kb on - strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose (C) and Betaine (N); with TAPS; with chloride remove 658,519 + +0.3 658,519 + +1.2 658,519 + -2.3 658,519 + +0.5 658,520 - +1.3 658,520 - +2.4 658,520 - -1.5 658,520 - -0.9 658,520 - +0.2 658,520 - +0.4 658,520 - +0.7 658,520 - +1.8 658,520 - +0.0 658,520 - +0.8 658,520 - +1.0 658,520 - +0.0 658,520 - -0.8 658,532 - +1.7 658,570 + +0.3 658,570 + -1.3 658,570 + +0.4 658,570 + -0.3 658,570 + -1.0 658,570 + +1.5 658,570 + +0.3 658,570 + -0.5 658,570 + +1.2 658,570 + +1.1 658,570 + +1.1 658,571 - +0.7 658,571 - -1.2 658,571 - +0.3 658,571 - -0.1 658,571 - +0.2 658,571 - +0.2 658,571 - -1.4 658,571 - -2.1 658,571 - +0.2 658,571 - -2.3 658,571 - +0.8 658,571 - -0.3 658,581 + +0.4 658,581 + -3.8 658,707 - PFLU_RS02860 0.12 -1.0 658,790 - PFLU_RS02860 0.39 -2.9 658,857 + PFLU_RS02860 0.61 -0.2 658,858 - PFLU_RS02860 0.61 -0.9 658,939 + PFLU_RS02860 0.88 -0.5 658,960 - +1.2 658,960 - +1.3 659,000 + +1.8 659,000 + -1.2 659,000 + -0.7 659,000 + -0.5 659,000 + -1.3 659,001 - +0.8 659,018 + +0.9 659,019 - +0.4 659,019 - -1.5 659,042 + PFLU_RS02865 0.13 -0.7 659,069 + PFLU_RS02865 0.18 +1.0 659,070 - PFLU_RS02865 0.18 -0.2 659,070 - PFLU_RS02865 0.18 -2.1 659,084 + PFLU_RS02865 0.21 -1.2 659,084 + PFLU_RS02865 0.21 -0.4 659,085 - PFLU_RS02865 0.21 -1.0 659,123 + PFLU_RS02865 0.28 -0.9 659,123 + PFLU_RS02865 0.28 -0.2 659,347 + PFLU_RS02865 0.70 -2.2 659,347 + PFLU_RS02865 0.70 -1.2 659,361 - PFLU_RS02865 0.73 -0.3 659,361 - PFLU_RS02865 0.73 -1.5 659,556 - -1.8 659,556 - -0.9 659,770 + PFLU_RS02870 0.50 +0.5 659,770 + PFLU_RS02870 0.50 -1.4 659,770 + PFLU_RS02870 0.50 -1.2 659,770 + PFLU_RS02870 0.50 -3.1 659,770 + PFLU_RS02870 0.50 -0.0 659,770 + PFLU_RS02870 0.50 +1.6 659,770 + PFLU_RS02870 0.50 +0.6 659,770 + PFLU_RS02870 0.50 +0.3 659,771 - PFLU_RS02870 0.51 +1.5 659,771 - PFLU_RS02870 0.51 -1.4 659,771 - PFLU_RS02870 0.51 -1.7 659,771 - PFLU_RS02870 0.51 -0.5 659,792 - PFLU_RS02870 0.55 +1.3 659,974 + -0.8 659,974 + +0.7 659,974 + -2.2 659,974 + -1.9 659,974 + -0.4 659,974 + -0.5 659,974 + +0.6 659,974 + +0.9 659,974 + +1.4 659,975 - -2.0 659,975 - +0.2 659,975 - -0.3 659,975 - -0.5 659,975 - -2.1 659,975 - -1.7 659,975 - +3.5 659,975 - -1.5 659,975 - -1.5 660,223 + PFLU_RS02875 0.63 +2.0 660,223 + PFLU_RS02875 0.63 +1.3 660,223 + PFLU_RS02875 0.63 +1.0 660,223 + PFLU_RS02875 0.63 +0.4 660,223 + PFLU_RS02875 0.63 +0.1 660,223 + PFLU_RS02875 0.63 -1.4 660,223 + PFLU_RS02875 0.63 +0.4 660,224 - PFLU_RS02875 0.63 +1.0 660,224 - PFLU_RS02875 0.63 +0.5 660,224 - PFLU_RS02875 0.63 +1.2 660,224 - PFLU_RS02875 0.63 +0.3 660,224 - PFLU_RS02875 0.63 +0.3 660,242 - PFLU_RS02875 0.69 +0.4 660,283 - PFLU_RS02875 0.83 -2.5 660,283 - PFLU_RS02875 0.83 -0.3 660,355 + -3.1 660,355 + +0.0 660,355 + +0.9 660,355 + -0.0 660,355 + -2.3 660,356 - -0.5 660,356 - +0.8 660,363 + -0.0 660,364 - +2.6 660,364 - +0.7 660,367 + +0.5 660,367 + -0.3 660,367 + +0.5 660,368 - +1.5 660,368 - +0.9 660,424 + +0.7 660,424 + -0.3 660,424 + -2.4 660,424 + -1.2 660,424 + -0.5 660,424 + +0.0 660,424 + +1.6 660,424 + +0.1 660,424 + -0.1 660,425 - -0.1 660,425 - -1.8 660,425 - +0.6 660,425 - -3.2 660,425 - -0.2 660,425 - -0.1 660,425 - +2.3 660,425 - +0.2 660,425 - +0.2 660,425 - +1.7 660,425 - -2.7 660,425 - -1.2 660,425 - -0.1 660,425 - +0.4 660,425 - +1.1 660,425 - +0.3 660,472 + +1.3 660,472 + -0.4 660,472 + +0.6 660,472 + +0.0 660,472 + +1.7 660,472 + -1.0 660,472 + +1.0 660,472 + -0.0 660,472 + -1.3
Or see this region's nucleotide sequence