Experiment: MoLS4 with 2-oxobutyrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bfr and DVU1398 are separated by 395 nucleotides DVU1398 and DVU1399 overlap by 4 nucleotides DVU1399 and DVU1400 are separated by 89 nucleotides
DVU1397: bfr - bacterioferritin (TIGR), at 1,466,087 to 1,466,626
bfr
DVU1398: DVU1398 - ISDvu2, transposase OrfB (TIGR), at 1,467,022 to 1,467,864
DVU1398
DVU1399: DVU1399 - ISDvu2, transposase OrfA (TIGR), at 1,467,861 to 1,468,259
DVU1399
DVU1400: DVU1400 - methyl-accepting chemotaxis protein (TIGR), at 1,468,349 to 1,470,241
DVU1400
Position (kb)
1467
1468 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1466.024 kb on - strand at 1466.072 kb on - strand at 1466.107 kb on - strand at 1466.151 kb on + strand, within bfr at 1466.178 kb on + strand, within bfr at 1466.186 kb on - strand, within bfr at 1466.219 kb on + strand, within bfr at 1466.241 kb on + strand, within bfr at 1466.351 kb on + strand, within bfr at 1466.496 kb on - strand, within bfr at 1466.526 kb on + strand, within bfr at 1466.983 kb on + strand at 1468.285 kb on + strand at 1468.292 kb on + strand at 1468.339 kb on + strand at 1468.347 kb on - strand at 1468.377 kb on - strand at 1468.419 kb on - strand at 1468.425 kb on + strand at 1468.441 kb on + strand at 1468.533 kb on - strand at 1468.544 kb on + strand, within DVU1400 at 1468.603 kb on + strand, within DVU1400 at 1468.728 kb on + strand, within DVU1400 at 1468.792 kb on + strand, within DVU1400 at 1468.812 kb on - strand, within DVU1400 at 1468.864 kb on + strand, within DVU1400
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with 2-oxobutyrate 10mM remove 1,466,024 - -2.5 1,466,072 - -0.3 1,466,107 - -0.8 1,466,151 + bfr DVU1397 0.12 -0.3 1,466,178 + bfr DVU1397 0.17 -1.8 1,466,186 - bfr DVU1397 0.18 +2.9 1,466,219 + bfr DVU1397 0.24 -1.9 1,466,241 + bfr DVU1397 0.29 -0.1 1,466,351 + bfr DVU1397 0.49 -0.5 1,466,496 - bfr DVU1397 0.76 -0.2 1,466,526 + bfr DVU1397 0.81 -0.7 1,466,983 + +0.0 1,468,285 + -0.1 1,468,292 + -0.3 1,468,339 + +0.8 1,468,347 - -1.1 1,468,377 - -2.1 1,468,419 - -0.4 1,468,425 + -0.6 1,468,441 + -0.2 1,468,533 - +0.2 1,468,544 + DVU1400 0.10 +0.2 1,468,603 + DVU1400 0.13 -0.3 1,468,728 + DVU1400 0.20 -0.7 1,468,792 + DVU1400 0.23 -0.4 1,468,812 - DVU1400 0.24 -0.1 1,468,864 + DVU1400 0.27 -0.5
Or see this region's nucleotide sequence