Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_563

Experiment: 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_562 and Pf6N2E2_563 are separated by 379 nucleotidesPf6N2E2_563 and Pf6N2E2_564 are separated by 312 nucleotides Pf6N2E2_562 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 635,624 to 636,577 _562 Pf6N2E2_563 - Serine transporter, at 636,957 to 638,237 _563 Pf6N2E2_564 - Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99), at 638,550 to 641,159 _564 Position (kb) 636 637 638 639Strain fitness (log2 ratio) -2 -1 0 1 2at 636.036 kb on + strand, within Pf6N2E2_562at 636.069 kb on + strand, within Pf6N2E2_562at 636.070 kb on - strand, within Pf6N2E2_562at 636.076 kb on + strand, within Pf6N2E2_562at 636.222 kb on - strand, within Pf6N2E2_562at 636.335 kb on + strand, within Pf6N2E2_562at 636.335 kb on + strand, within Pf6N2E2_562at 636.335 kb on + strand, within Pf6N2E2_562at 636.335 kb on + strand, within Pf6N2E2_562at 636.336 kb on - strand, within Pf6N2E2_562at 636.336 kb on - strand, within Pf6N2E2_562at 636.336 kb on - strand, within Pf6N2E2_562at 636.534 kb on + strandat 636.535 kb on - strandat 636.590 kb on + strandat 636.590 kb on + strandat 636.590 kb on + strandat 636.590 kb on + strandat 636.590 kb on + strandat 636.591 kb on - strandat 636.591 kb on - strandat 636.612 kb on + strandat 636.613 kb on - strandat 636.613 kb on - strandat 636.627 kb on + strandat 636.628 kb on - strandat 636.628 kb on - strandat 636.628 kb on - strandat 636.628 kb on - strandat 636.658 kb on + strandat 636.658 kb on + strandat 636.658 kb on + strandat 636.658 kb on + strandat 636.658 kb on + strandat 636.659 kb on - strandat 636.661 kb on + strandat 636.661 kb on + strandat 636.690 kb on + strandat 636.694 kb on + strandat 636.694 kb on + strandat 636.694 kb on + strandat 636.695 kb on - strandat 636.695 kb on - strandat 636.720 kb on + strandat 636.721 kb on - strandat 636.787 kb on + strandat 636.809 kb on + strandat 636.809 kb on + strandat 636.815 kb on + strandat 637.082 kb on + strandat 637.083 kb on - strandat 637.083 kb on - strandat 637.083 kb on - strandat 637.167 kb on + strand, within Pf6N2E2_563at 637.167 kb on + strand, within Pf6N2E2_563at 637.167 kb on + strand, within Pf6N2E2_563at 637.168 kb on - strand, within Pf6N2E2_563at 637.168 kb on - strand, within Pf6N2E2_563at 637.168 kb on - strand, within Pf6N2E2_563at 637.168 kb on - strand, within Pf6N2E2_563at 637.281 kb on + strand, within Pf6N2E2_563at 637.282 kb on - strand, within Pf6N2E2_563at 637.282 kb on - strand, within Pf6N2E2_563at 637.314 kb on + strand, within Pf6N2E2_563at 637.314 kb on + strand, within Pf6N2E2_563at 637.315 kb on - strand, within Pf6N2E2_563at 637.315 kb on - strand, within Pf6N2E2_563at 637.315 kb on - strand, within Pf6N2E2_563at 637.368 kb on - strand, within Pf6N2E2_563at 637.586 kb on + strand, within Pf6N2E2_563at 637.586 kb on + strand, within Pf6N2E2_563at 637.587 kb on - strand, within Pf6N2E2_563at 637.587 kb on - strand, within Pf6N2E2_563at 637.830 kb on + strand, within Pf6N2E2_563at 637.921 kb on - strand, within Pf6N2E2_563at 637.921 kb on - strand, within Pf6N2E2_563at 637.921 kb on - strand, within Pf6N2E2_563at 638.121 kb on + strandat 638.122 kb on - strandat 638.122 kb on - strandat 638.221 kb on - strandat 638.345 kb on + strandat 638.346 kb on - strandat 638.445 kb on + strandat 638.494 kb on + strandat 638.494 kb on + strandat 638.495 kb on - strandat 638.495 kb on - strandat 638.545 kb on - strandat 638.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
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636,036 + Pf6N2E2_562 0.43 +0.4
636,069 + Pf6N2E2_562 0.47 -1.0
636,070 - Pf6N2E2_562 0.47 -0.4
636,076 + Pf6N2E2_562 0.47 -1.0
636,222 - Pf6N2E2_562 0.63 +1.2
636,335 + Pf6N2E2_562 0.75 -0.6
636,335 + Pf6N2E2_562 0.75 +0.1
636,335 + Pf6N2E2_562 0.75 +0.3
636,335 + Pf6N2E2_562 0.75 +0.2
636,336 - Pf6N2E2_562 0.75 -0.4
636,336 - Pf6N2E2_562 0.75 -0.6
636,336 - Pf6N2E2_562 0.75 +0.2
636,534 + +1.2
636,535 - +0.2
636,590 + +0.6
636,590 + -0.7
636,590 + +0.2
636,590 + +0.9
636,590 + +0.3
636,591 - -0.7
636,591 - -0.1
636,612 + -0.1
636,613 - +0.2
636,613 - +0.6
636,627 + -0.4
636,628 - +1.2
636,628 - -0.4
636,628 - -0.8
636,628 - -2.0
636,658 + +0.8
636,658 + +0.2
636,658 + +1.1
636,658 + +2.0
636,658 + -0.3
636,659 - +0.4
636,661 + +0.1
636,661 + -0.2
636,690 + -1.1
636,694 + -0.1
636,694 + +0.4
636,694 + +0.2
636,695 - -0.4
636,695 - +1.4
636,720 + +1.0
636,721 - -0.0
636,787 + -0.7
636,809 + +0.2
636,809 + +0.1
636,815 + +0.0
637,082 + -0.4
637,083 - -0.0
637,083 - -0.4
637,083 - -0.4
637,167 + Pf6N2E2_563 0.16 -0.0
637,167 + Pf6N2E2_563 0.16 +0.2
637,167 + Pf6N2E2_563 0.16 -0.0
637,168 - Pf6N2E2_563 0.16 -0.4
637,168 - Pf6N2E2_563 0.16 -0.5
637,168 - Pf6N2E2_563 0.16 +1.5
637,168 - Pf6N2E2_563 0.16 +1.5
637,281 + Pf6N2E2_563 0.25 -0.0
637,282 - Pf6N2E2_563 0.25 +0.9
637,282 - Pf6N2E2_563 0.25 -0.4
637,314 + Pf6N2E2_563 0.28 +0.9
637,314 + Pf6N2E2_563 0.28 -1.0
637,315 - Pf6N2E2_563 0.28 +2.0
637,315 - Pf6N2E2_563 0.28 -0.4
637,315 - Pf6N2E2_563 0.28 -0.9
637,368 - Pf6N2E2_563 0.32 +0.0
637,586 + Pf6N2E2_563 0.49 +1.6
637,586 + Pf6N2E2_563 0.49 +1.0
637,587 - Pf6N2E2_563 0.49 +0.2
637,587 - Pf6N2E2_563 0.49 -1.4
637,830 + Pf6N2E2_563 0.68 +0.6
637,921 - Pf6N2E2_563 0.75 +0.0
637,921 - Pf6N2E2_563 0.75 -1.4
637,921 - Pf6N2E2_563 0.75 +0.6
638,121 + -0.1
638,122 - -0.4
638,122 - +1.2
638,221 - -0.4
638,345 + -0.6
638,346 - -0.4
638,445 + +0.9
638,494 + +0.6
638,494 + +0.0
638,495 - +0.6
638,495 - +0.5
638,545 - +1.2
638,545 - -0.4

Or see this region's nucleotide sequence