Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3122

Experiment: 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3121 and Pf6N2E2_3122 overlap by 4 nucleotidesPf6N2E2_3122 and Pf6N2E2_3123 overlap by 1 nucleotides Pf6N2E2_3121 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 3,611,012 to 3,612,277 _3121 Pf6N2E2_3122 - Chemotaxis signal transduction protein, at 3,612,274 to 3,612,810 _3122 Pf6N2E2_3123 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 3,612,810 to 3,614,432 _3123 Position (kb) 3612 3613Strain fitness (log2 ratio) -2 -1 0 1 2at 3611.317 kb on + strand, within Pf6N2E2_3121at 3611.570 kb on - strand, within Pf6N2E2_3121at 3611.787 kb on + strand, within Pf6N2E2_3121at 3611.787 kb on + strand, within Pf6N2E2_3121at 3611.787 kb on + strand, within Pf6N2E2_3121at 3611.944 kb on - strand, within Pf6N2E2_3121at 3612.141 kb on + strand, within Pf6N2E2_3121at 3612.141 kb on + strand, within Pf6N2E2_3121at 3612.142 kb on - strand, within Pf6N2E2_3121at 3612.411 kb on - strand, within Pf6N2E2_3122at 3612.411 kb on - strand, within Pf6N2E2_3122at 3612.438 kb on - strand, within Pf6N2E2_3122at 3613.162 kb on + strand, within Pf6N2E2_3123at 3613.162 kb on + strand, within Pf6N2E2_3123at 3613.162 kb on + strand, within Pf6N2E2_3123at 3613.162 kb on + strand, within Pf6N2E2_3123at 3613.163 kb on - strand, within Pf6N2E2_3123at 3613.163 kb on - strand, within Pf6N2E2_3123at 3613.163 kb on - strand, within Pf6N2E2_3123at 3613.163 kb on - strand, within Pf6N2E2_3123at 3613.163 kb on - strand, within Pf6N2E2_3123at 3613.197 kb on + strand, within Pf6N2E2_3123at 3613.197 kb on + strand, within Pf6N2E2_3123at 3613.198 kb on - strand, within Pf6N2E2_3123at 3613.198 kb on - strand, within Pf6N2E2_3123at 3613.198 kb on - strand, within Pf6N2E2_3123at 3613.232 kb on - strand, within Pf6N2E2_3123at 3613.810 kb on - strand, within Pf6N2E2_3123

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Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
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3,611,317 + Pf6N2E2_3121 0.24 +1.2
3,611,570 - Pf6N2E2_3121 0.44 +0.9
3,611,787 + Pf6N2E2_3121 0.61 -0.0
3,611,787 + Pf6N2E2_3121 0.61 +1.2
3,611,787 + Pf6N2E2_3121 0.61 -0.1
3,611,944 - Pf6N2E2_3121 0.74 -0.1
3,612,141 + Pf6N2E2_3121 0.89 -0.8
3,612,141 + Pf6N2E2_3121 0.89 -0.8
3,612,142 - Pf6N2E2_3121 0.89 +0.2
3,612,411 - Pf6N2E2_3122 0.26 -0.6
3,612,411 - Pf6N2E2_3122 0.26 +0.2
3,612,438 - Pf6N2E2_3122 0.31 -1.8
3,613,162 + Pf6N2E2_3123 0.22 -0.8
3,613,162 + Pf6N2E2_3123 0.22 +0.4
3,613,162 + Pf6N2E2_3123 0.22 +1.0
3,613,162 + Pf6N2E2_3123 0.22 +0.1
3,613,163 - Pf6N2E2_3123 0.22 +1.2
3,613,163 - Pf6N2E2_3123 0.22 -0.3
3,613,163 - Pf6N2E2_3123 0.22 +0.2
3,613,163 - Pf6N2E2_3123 0.22 +0.2
3,613,163 - Pf6N2E2_3123 0.22 -0.4
3,613,197 + Pf6N2E2_3123 0.24 -0.3
3,613,197 + Pf6N2E2_3123 0.24 -0.0
3,613,198 - Pf6N2E2_3123 0.24 +0.6
3,613,198 - Pf6N2E2_3123 0.24 +0.8
3,613,198 - Pf6N2E2_3123 0.24 +0.0
3,613,232 - Pf6N2E2_3123 0.26 +1.8
3,613,810 - Pf6N2E2_3123 0.62 +0.2

Or see this region's nucleotide sequence