Experiment: Glucose (C) and Betaine (N); with TAPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS04020 and PFLU_RS04025 are separated by 192 nucleotides PFLU_RS04025 and PFLU_RS04030 are separated by 70 nucleotides
PFLU_RS04020: PFLU_RS04020 - PTS fructose-like transporter subunit IIB, at 908,870 to 910,582
_RS04020
PFLU_RS04025: PFLU_RS04025 - alkaline phosphatase, at 910,775 to 912,316
_RS04025
PFLU_RS04030: PFLU_RS04030 - flavodoxin, at 912,387 to 914,912
_RS04030
Position (kb) 910
911
912
913 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 909.839 kb on - strand, within PFLU_RS04020 at 909.958 kb on + strand, within PFLU_RS04020 at 909.977 kb on + strand, within PFLU_RS04020 at 909.977 kb on + strand, within PFLU_RS04020 at 909.977 kb on + strand, within PFLU_RS04020 at 909.977 kb on + strand, within PFLU_RS04020 at 909.978 kb on - strand, within PFLU_RS04020 at 909.978 kb on - strand, within PFLU_RS04020 at 909.978 kb on - strand, within PFLU_RS04020 at 909.978 kb on - strand, within PFLU_RS04020 at 909.978 kb on - strand, within PFLU_RS04020 at 909.978 kb on - strand, within PFLU_RS04020 at 909.978 kb on - strand, within PFLU_RS04020 at 909.978 kb on - strand, within PFLU_RS04020 at 910.059 kb on + strand, within PFLU_RS04020 at 910.060 kb on - strand, within PFLU_RS04020 at 910.125 kb on - strand, within PFLU_RS04020 at 910.143 kb on + strand, within PFLU_RS04020 at 910.300 kb on + strand, within PFLU_RS04020 at 910.300 kb on + strand, within PFLU_RS04020 at 910.300 kb on + strand, within PFLU_RS04020 at 910.300 kb on + strand, within PFLU_RS04020 at 910.300 kb on + strand, within PFLU_RS04020 at 910.301 kb on - strand, within PFLU_RS04020 at 910.301 kb on - strand, within PFLU_RS04020 at 910.301 kb on - strand, within PFLU_RS04020 at 910.301 kb on - strand, within PFLU_RS04020 at 910.301 kb on - strand, within PFLU_RS04020 at 910.301 kb on - strand, within PFLU_RS04020 at 910.301 kb on - strand, within PFLU_RS04020 at 910.301 kb on - strand, within PFLU_RS04020 at 910.301 kb on - strand, within PFLU_RS04020 at 910.301 kb on - strand, within PFLU_RS04020 at 910.397 kb on + strand, within PFLU_RS04020 at 910.397 kb on + strand, within PFLU_RS04020 at 910.397 kb on + strand, within PFLU_RS04020 at 910.397 kb on + strand, within PFLU_RS04020 at 910.397 kb on + strand, within PFLU_RS04020 at 910.397 kb on + strand, within PFLU_RS04020 at 910.398 kb on - strand, within PFLU_RS04020 at 910.398 kb on - strand, within PFLU_RS04020 at 910.398 kb on - strand, within PFLU_RS04020 at 910.398 kb on - strand, within PFLU_RS04020 at 910.398 kb on - strand, within PFLU_RS04020 at 910.398 kb on - strand, within PFLU_RS04020 at 910.398 kb on - strand, within PFLU_RS04020 at 910.398 kb on - strand, within PFLU_RS04020 at 910.398 kb on - strand, within PFLU_RS04020 at 910.434 kb on + strand at 910.434 kb on + strand at 910.434 kb on + strand at 910.434 kb on + strand at 910.434 kb on + strand at 910.435 kb on - strand at 910.435 kb on - strand at 910.435 kb on - strand at 910.435 kb on - strand at 910.435 kb on - strand at 910.435 kb on - strand at 910.435 kb on - strand at 910.435 kb on - strand at 910.435 kb on - strand at 910.435 kb on - strand at 910.435 kb on - strand at 910.478 kb on + strand at 910.478 kb on + strand at 910.478 kb on + strand at 910.478 kb on + strand at 910.478 kb on + strand at 910.478 kb on + strand at 910.479 kb on - strand at 910.479 kb on - strand at 910.523 kb on + strand at 910.523 kb on + strand at 910.523 kb on + strand at 910.523 kb on + strand at 910.523 kb on + strand at 910.523 kb on + strand at 910.524 kb on - strand at 910.524 kb on - strand at 910.524 kb on - strand at 910.524 kb on - strand at 910.524 kb on - strand at 910.524 kb on - strand at 910.524 kb on - strand at 910.524 kb on - strand at 910.524 kb on - strand at 910.551 kb on + strand at 910.551 kb on + strand at 910.552 kb on - strand at 910.643 kb on - strand at 910.740 kb on + strand at 910.740 kb on + strand at 910.741 kb on - strand at 910.741 kb on - strand at 910.757 kb on - strand at 910.899 kb on + strand at 910.899 kb on + strand at 910.900 kb on - strand at 910.900 kb on - strand at 910.900 kb on - strand at 910.968 kb on + strand, within PFLU_RS04025 at 911.261 kb on + strand, within PFLU_RS04025 at 911.261 kb on + strand, within PFLU_RS04025 at 911.261 kb on + strand, within PFLU_RS04025 at 911.261 kb on + strand, within PFLU_RS04025 at 911.261 kb on + strand, within PFLU_RS04025 at 911.261 kb on + strand, within PFLU_RS04025 at 911.261 kb on + strand, within PFLU_RS04025 at 911.261 kb on + strand, within PFLU_RS04025 at 911.261 kb on + strand, within PFLU_RS04025 at 911.261 kb on + strand, within PFLU_RS04025 at 911.262 kb on - strand, within PFLU_RS04025 at 911.262 kb on - strand, within PFLU_RS04025 at 911.318 kb on + strand, within PFLU_RS04025 at 911.318 kb on + strand, within PFLU_RS04025 at 911.318 kb on + strand, within PFLU_RS04025 at 911.318 kb on + strand, within PFLU_RS04025 at 911.319 kb on - strand, within PFLU_RS04025 at 911.319 kb on - strand, within PFLU_RS04025 at 911.319 kb on - strand, within PFLU_RS04025 at 911.377 kb on + strand, within PFLU_RS04025 at 911.377 kb on + strand, within PFLU_RS04025 at 911.377 kb on + strand, within PFLU_RS04025 at 911.377 kb on + strand, within PFLU_RS04025 at 911.377 kb on + strand, within PFLU_RS04025 at 911.378 kb on - strand, within PFLU_RS04025 at 911.378 kb on - strand, within PFLU_RS04025 at 911.378 kb on - strand, within PFLU_RS04025 at 911.423 kb on + strand, within PFLU_RS04025 at 911.424 kb on - strand, within PFLU_RS04025 at 911.435 kb on + strand, within PFLU_RS04025 at 911.435 kb on + strand, within PFLU_RS04025 at 911.435 kb on + strand, within PFLU_RS04025 at 911.435 kb on + strand, within PFLU_RS04025 at 911.435 kb on + strand, within PFLU_RS04025 at 911.435 kb on + strand, within PFLU_RS04025 at 911.436 kb on - strand, within PFLU_RS04025 at 911.441 kb on + strand, within PFLU_RS04025 at 911.615 kb on + strand, within PFLU_RS04025 at 911.616 kb on - strand, within PFLU_RS04025 at 911.616 kb on - strand, within PFLU_RS04025 at 911.616 kb on - strand, within PFLU_RS04025 at 911.661 kb on - strand, within PFLU_RS04025 at 911.675 kb on + strand, within PFLU_RS04025 at 911.675 kb on + strand, within PFLU_RS04025 at 911.675 kb on + strand, within PFLU_RS04025 at 911.675 kb on + strand, within PFLU_RS04025 at 911.675 kb on + strand, within PFLU_RS04025 at 911.675 kb on + strand, within PFLU_RS04025 at 911.675 kb on + strand, within PFLU_RS04025 at 911.675 kb on + strand, within PFLU_RS04025 at 911.676 kb on - strand, within PFLU_RS04025 at 911.676 kb on - strand, within PFLU_RS04025 at 911.676 kb on - strand, within PFLU_RS04025 at 911.676 kb on - strand, within PFLU_RS04025 at 911.717 kb on + strand, within PFLU_RS04025 at 912.020 kb on + strand, within PFLU_RS04025 at 912.020 kb on + strand, within PFLU_RS04025 at 912.020 kb on + strand, within PFLU_RS04025 at 912.020 kb on + strand, within PFLU_RS04025 at 912.021 kb on - strand, within PFLU_RS04025 at 912.021 kb on - strand, within PFLU_RS04025 at 912.038 kb on + strand, within PFLU_RS04025 at 912.038 kb on + strand, within PFLU_RS04025 at 912.038 kb on + strand, within PFLU_RS04025 at 912.039 kb on - strand, within PFLU_RS04025 at 912.039 kb on - strand, within PFLU_RS04025 at 912.039 kb on - strand, within PFLU_RS04025 at 912.137 kb on - strand, within PFLU_RS04025 at 912.375 kb on + strand at 912.375 kb on + strand at 912.376 kb on - strand at 912.376 kb on - strand at 912.376 kb on - strand at 912.392 kb on - strand at 912.508 kb on + strand at 912.508 kb on + strand at 912.508 kb on + strand at 912.508 kb on + strand at 912.508 kb on + strand at 912.508 kb on + strand at 912.508 kb on + strand at 912.509 kb on - strand at 912.509 kb on - strand at 912.509 kb on - strand at 912.509 kb on - strand at 912.509 kb on - strand at 912.536 kb on + strand at 912.536 kb on + strand at 912.536 kb on + strand at 912.536 kb on + strand at 912.536 kb on + strand at 912.536 kb on + strand at 912.536 kb on + strand at 912.537 kb on - strand at 912.537 kb on - strand at 912.537 kb on - strand at 912.537 kb on - strand at 912.537 kb on - strand at 912.537 kb on - strand at 912.537 kb on - strand at 912.537 kb on - strand at 912.577 kb on + strand at 912.577 kb on + strand at 912.577 kb on + strand at 912.578 kb on - strand at 912.670 kb on + strand, within PFLU_RS04030 at 912.670 kb on + strand, within PFLU_RS04030 at 912.670 kb on + strand, within PFLU_RS04030 at 912.671 kb on - strand, within PFLU_RS04030 at 912.671 kb on - strand, within PFLU_RS04030 at 912.671 kb on - strand, within PFLU_RS04030 at 912.671 kb on - strand, within PFLU_RS04030 at 912.671 kb on - strand, within PFLU_RS04030 at 912.671 kb on - strand, within PFLU_RS04030 at 912.671 kb on - strand, within PFLU_RS04030 at 912.684 kb on - strand, within PFLU_RS04030 at 912.703 kb on - strand, within PFLU_RS04030 at 912.828 kb on - strand, within PFLU_RS04030 at 912.828 kb on - strand, within PFLU_RS04030 at 912.974 kb on - strand, within PFLU_RS04030 at 913.107 kb on + strand, within PFLU_RS04030 at 913.240 kb on + strand, within PFLU_RS04030 at 913.240 kb on + strand, within PFLU_RS04030 at 913.241 kb on - strand, within PFLU_RS04030
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose (C) and Betaine (N); with TAPS; with chloride remove 909,839 - PFLU_RS04020 0.57 -1.1 909,958 + PFLU_RS04020 0.64 -2.8 909,977 + PFLU_RS04020 0.65 -1.1 909,977 + PFLU_RS04020 0.65 -2.9 909,977 + PFLU_RS04020 0.65 +0.4 909,977 + PFLU_RS04020 0.65 +0.3 909,978 - PFLU_RS04020 0.65 +0.6 909,978 - PFLU_RS04020 0.65 -2.6 909,978 - PFLU_RS04020 0.65 +0.4 909,978 - PFLU_RS04020 0.65 -1.0 909,978 - PFLU_RS04020 0.65 -2.5 909,978 - PFLU_RS04020 0.65 +1.0 909,978 - PFLU_RS04020 0.65 -0.5 909,978 - PFLU_RS04020 0.65 -1.4 910,059 + PFLU_RS04020 0.69 -1.4 910,060 - PFLU_RS04020 0.69 -0.7 910,125 - PFLU_RS04020 0.73 -1.0 910,143 + PFLU_RS04020 0.74 +0.2 910,300 + PFLU_RS04020 0.83 -2.5 910,300 + PFLU_RS04020 0.83 -0.8 910,300 + PFLU_RS04020 0.83 +0.1 910,300 + PFLU_RS04020 0.83 +1.2 910,300 + PFLU_RS04020 0.83 -0.7 910,301 - PFLU_RS04020 0.84 -1.5 910,301 - PFLU_RS04020 0.84 -2.4 910,301 - PFLU_RS04020 0.84 +0.9 910,301 - PFLU_RS04020 0.84 +0.2 910,301 - PFLU_RS04020 0.84 +0.0 910,301 - PFLU_RS04020 0.84 -0.6 910,301 - PFLU_RS04020 0.84 +0.5 910,301 - PFLU_RS04020 0.84 -0.5 910,301 - PFLU_RS04020 0.84 -0.4 910,301 - PFLU_RS04020 0.84 -0.3 910,397 + PFLU_RS04020 0.89 -0.9 910,397 + PFLU_RS04020 0.89 -0.6 910,397 + PFLU_RS04020 0.89 -2.0 910,397 + PFLU_RS04020 0.89 -1.3 910,397 + PFLU_RS04020 0.89 -1.6 910,397 + PFLU_RS04020 0.89 -1.5 910,398 - PFLU_RS04020 0.89 -1.6 910,398 - PFLU_RS04020 0.89 +0.5 910,398 - PFLU_RS04020 0.89 +0.4 910,398 - PFLU_RS04020 0.89 -0.3 910,398 - PFLU_RS04020 0.89 +1.2 910,398 - PFLU_RS04020 0.89 -0.1 910,398 - PFLU_RS04020 0.89 -0.1 910,398 - PFLU_RS04020 0.89 -1.3 910,398 - PFLU_RS04020 0.89 -1.3 910,434 + -0.9 910,434 + -2.3 910,434 + -0.4 910,434 + +0.6 910,434 + -2.9 910,435 - -1.2 910,435 - +0.6 910,435 - -0.6 910,435 - -1.0 910,435 - -1.6 910,435 - -0.8 910,435 - +0.2 910,435 - -1.1 910,435 - -0.3 910,435 - -0.7 910,435 - -2.0 910,478 + +0.4 910,478 + -0.7 910,478 + +2.5 910,478 + -0.8 910,478 + -3.5 910,478 + -2.3 910,479 - +1.4 910,479 - +0.3 910,523 + -3.2 910,523 + +0.2 910,523 + +0.2 910,523 + +0.6 910,523 + -3.4 910,523 + -1.6 910,524 - +0.9 910,524 - -0.6 910,524 - +0.0 910,524 - +0.6 910,524 - -1.0 910,524 - -1.5 910,524 - -2.0 910,524 - -1.3 910,524 - +1.1 910,551 + -0.9 910,551 + +1.5 910,552 - -0.4 910,643 - -2.9 910,740 + +1.5 910,740 + +2.3 910,741 - -0.3 910,741 - +0.2 910,757 - +0.5 910,899 + -2.5 910,899 + +0.2 910,900 - -1.5 910,900 - -1.7 910,900 - +0.8 910,968 + PFLU_RS04025 0.13 +0.3 911,261 + PFLU_RS04025 0.32 -0.1 911,261 + PFLU_RS04025 0.32 -2.1 911,261 + PFLU_RS04025 0.32 -0.4 911,261 + PFLU_RS04025 0.32 +0.4 911,261 + PFLU_RS04025 0.32 +1.0 911,261 + PFLU_RS04025 0.32 -2.1 911,261 + PFLU_RS04025 0.32 +0.9 911,261 + PFLU_RS04025 0.32 +0.4 911,261 + PFLU_RS04025 0.32 -0.1 911,261 + PFLU_RS04025 0.32 +1.2 911,262 - PFLU_RS04025 0.32 -1.1 911,262 - PFLU_RS04025 0.32 +1.2 911,318 + PFLU_RS04025 0.35 -0.2 911,318 + PFLU_RS04025 0.35 -2.1 911,318 + PFLU_RS04025 0.35 -2.1 911,318 + PFLU_RS04025 0.35 -1.3 911,319 - PFLU_RS04025 0.35 -0.8 911,319 - PFLU_RS04025 0.35 -0.6 911,319 - PFLU_RS04025 0.35 -0.5 911,377 + PFLU_RS04025 0.39 +0.6 911,377 + PFLU_RS04025 0.39 +2.5 911,377 + PFLU_RS04025 0.39 -2.9 911,377 + PFLU_RS04025 0.39 +1.2 911,377 + PFLU_RS04025 0.39 -0.4 911,378 - PFLU_RS04025 0.39 -0.1 911,378 - PFLU_RS04025 0.39 -2.0 911,378 - PFLU_RS04025 0.39 -2.2 911,423 + PFLU_RS04025 0.42 -0.1 911,424 - PFLU_RS04025 0.42 +0.1 911,435 + PFLU_RS04025 0.43 -2.1 911,435 + PFLU_RS04025 0.43 -2.3 911,435 + PFLU_RS04025 0.43 +1.2 911,435 + PFLU_RS04025 0.43 -1.7 911,435 + PFLU_RS04025 0.43 +0.3 911,435 + PFLU_RS04025 0.43 -2.8 911,436 - PFLU_RS04025 0.43 -0.6 911,441 + PFLU_RS04025 0.43 -1.1 911,615 + PFLU_RS04025 0.54 -0.5 911,616 - PFLU_RS04025 0.55 +1.2 911,616 - PFLU_RS04025 0.55 -1.0 911,616 - PFLU_RS04025 0.55 -2.1 911,661 - PFLU_RS04025 0.57 +0.2 911,675 + PFLU_RS04025 0.58 -0.3 911,675 + PFLU_RS04025 0.58 -0.9 911,675 + PFLU_RS04025 0.58 -0.4 911,675 + PFLU_RS04025 0.58 -1.2 911,675 + PFLU_RS04025 0.58 -1.1 911,675 + PFLU_RS04025 0.58 -2.2 911,675 + PFLU_RS04025 0.58 -0.1 911,675 + PFLU_RS04025 0.58 -0.1 911,676 - PFLU_RS04025 0.58 -1.9 911,676 - PFLU_RS04025 0.58 +0.7 911,676 - PFLU_RS04025 0.58 -1.7 911,676 - PFLU_RS04025 0.58 -2.0 911,717 + PFLU_RS04025 0.61 -1.3 912,020 + PFLU_RS04025 0.81 -1.6 912,020 + PFLU_RS04025 0.81 -3.0 912,020 + PFLU_RS04025 0.81 +1.1 912,020 + PFLU_RS04025 0.81 +1.4 912,021 - PFLU_RS04025 0.81 +0.5 912,021 - PFLU_RS04025 0.81 +0.4 912,038 + PFLU_RS04025 0.82 +1.9 912,038 + PFLU_RS04025 0.82 -1.2 912,038 + PFLU_RS04025 0.82 -3.4 912,039 - PFLU_RS04025 0.82 +0.2 912,039 - PFLU_RS04025 0.82 -0.1 912,039 - PFLU_RS04025 0.82 -2.0 912,137 - PFLU_RS04025 0.88 -0.1 912,375 + -0.9 912,375 + +0.3 912,376 - +0.2 912,376 - +0.9 912,376 - +0.1 912,392 - -1.4 912,508 + +1.3 912,508 + +0.5 912,508 + +0.6 912,508 + +2.2 912,508 + +0.1 912,508 + -2.0 912,508 + +0.0 912,509 - +0.0 912,509 - +0.5 912,509 - +0.4 912,509 - -1.5 912,509 - -0.1 912,536 + +0.7 912,536 + -1.5 912,536 + -0.8 912,536 + +0.0 912,536 + -2.9 912,536 + +0.3 912,536 + -0.4 912,537 - -1.7 912,537 - -1.8 912,537 - +0.7 912,537 - +0.7 912,537 - +0.4 912,537 - -0.2 912,537 - +0.4 912,537 - +1.0 912,577 + -1.4 912,577 + -2.1 912,577 + -0.2 912,578 - +0.8 912,670 + PFLU_RS04030 0.11 +0.9 912,670 + PFLU_RS04030 0.11 -1.4 912,670 + PFLU_RS04030 0.11 -1.1 912,671 - PFLU_RS04030 0.11 -0.2 912,671 - PFLU_RS04030 0.11 +0.2 912,671 - PFLU_RS04030 0.11 -3.1 912,671 - PFLU_RS04030 0.11 +2.4 912,671 - PFLU_RS04030 0.11 +1.0 912,671 - PFLU_RS04030 0.11 -1.4 912,671 - PFLU_RS04030 0.11 +1.5 912,684 - PFLU_RS04030 0.12 -1.9 912,703 - PFLU_RS04030 0.13 -0.3 912,828 - PFLU_RS04030 0.17 -0.5 912,828 - PFLU_RS04030 0.17 -1.5 912,974 - PFLU_RS04030 0.23 +2.2 913,107 + PFLU_RS04030 0.29 -1.4 913,240 + PFLU_RS04030 0.34 +0.4 913,240 + PFLU_RS04030 0.34 -0.1 913,241 - PFLU_RS04030 0.34 +1.1
Or see this region's nucleotide sequence