Experiment: MoLS4 with 2-oxobutyrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2872 and DVU2873 are separated by 3 nucleotides DVU2873 and DVU2874 are separated by 226 nucleotides DVU2874 and DVU2875 overlap by 8 nucleotides DVU2875 and DVU2876 overlap by 4 nucleotides
DVU2872: DVU2872 - phage portal protein, lambda family (TIGR), at 2,966,622 to 2,968,322
DVU2872
DVU2873: DVU2873 - hypothetical protein (TIGR), at 2,968,326 to 2,968,601
DVU2873
DVU2874: DVU2874 - hypothetical protein (TIGR), at 2,968,828 to 2,969,256
DVU2874
DVU2875: DVU2875 - DNA-binding domain, excisionase family (TIGR), at 2,969,249 to 2,969,467
DVU2875
DVU2876: DVU2876 - terminase, large subunit, putative (TIGR), at 2,969,464 to 2,971,350
DVU2876
Position (kb)
2968
2969
2970 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2967.969 kb on + strand, within DVU2872 at 2968.038 kb on - strand, within DVU2872 at 2968.109 kb on + strand, within DVU2872 at 2968.132 kb on - strand, within DVU2872 at 2968.160 kb on - strand at 2968.226 kb on + strand at 2968.487 kb on - strand, within DVU2873 at 2968.574 kb on + strand at 2968.582 kb on + strand at 2968.685 kb on + strand at 2968.706 kb on + strand at 2968.706 kb on + strand at 2968.778 kb on + strand at 2968.786 kb on - strand at 2968.834 kb on - strand at 2968.890 kb on + strand, within DVU2874 at 2969.011 kb on - strand, within DVU2874 at 2969.030 kb on + strand, within DVU2874 at 2969.047 kb on + strand, within DVU2874 at 2969.055 kb on - strand, within DVU2874 at 2969.081 kb on + strand, within DVU2874 at 2969.128 kb on - strand, within DVU2874 at 2969.142 kb on + strand, within DVU2874 at 2969.150 kb on - strand, within DVU2874 at 2969.152 kb on + strand, within DVU2874 at 2969.152 kb on + strand, within DVU2874 at 2969.193 kb on - strand, within DVU2874 at 2969.328 kb on - strand, within DVU2875 at 2969.405 kb on + strand, within DVU2875 at 2969.411 kb on - strand, within DVU2875 at 2969.415 kb on + strand, within DVU2875 at 2969.415 kb on + strand, within DVU2875 at 2969.496 kb on + strand at 2969.562 kb on + strand at 2969.570 kb on - strand at 2969.577 kb on + strand at 2969.577 kb on + strand at 2969.584 kb on + strand at 2969.585 kb on - strand at 2969.585 kb on - strand at 2969.602 kb on + strand at 2969.610 kb on - strand at 2969.615 kb on - strand at 2969.629 kb on - strand at 2969.979 kb on + strand, within DVU2876 at 2970.152 kb on + strand, within DVU2876 at 2970.165 kb on - strand, within DVU2876 at 2970.174 kb on - strand, within DVU2876 at 2970.255 kb on + strand, within DVU2876 at 2970.255 kb on + strand, within DVU2876
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with 2-oxobutyrate 10mM remove 2,967,969 + DVU2872 0.79 -2.6 2,968,038 - DVU2872 0.83 +0.1 2,968,109 + DVU2872 0.87 -0.1 2,968,132 - DVU2872 0.89 +0.0 2,968,160 - +1.6 2,968,226 + -0.0 2,968,487 - DVU2873 0.58 -0.1 2,968,574 + -0.2 2,968,582 + -1.4 2,968,685 + -0.6 2,968,706 + +0.0 2,968,706 + -1.5 2,968,778 + +1.4 2,968,786 - -0.7 2,968,834 - +1.8 2,968,890 + DVU2874 0.14 -0.6 2,969,011 - DVU2874 0.43 -0.5 2,969,030 + DVU2874 0.47 -0.4 2,969,047 + DVU2874 0.51 -1.0 2,969,055 - DVU2874 0.53 -1.0 2,969,081 + DVU2874 0.59 +0.5 2,969,128 - DVU2874 0.70 -0.5 2,969,142 + DVU2874 0.73 -0.8 2,969,150 - DVU2874 0.75 -0.5 2,969,152 + DVU2874 0.76 -0.3 2,969,152 + DVU2874 0.76 -0.7 2,969,193 - DVU2874 0.85 -2.0 2,969,328 - DVU2875 0.36 -0.2 2,969,405 + DVU2875 0.71 -0.1 2,969,411 - DVU2875 0.74 -1.1 2,969,415 + DVU2875 0.76 -2.1 2,969,415 + DVU2875 0.76 +2.7 2,969,496 + -0.0 2,969,562 + +0.8 2,969,570 - +1.0 2,969,577 + +0.2 2,969,577 + +0.5 2,969,584 + +0.4 2,969,585 - -2.4 2,969,585 - -0.6 2,969,602 + +1.3 2,969,610 - +0.2 2,969,615 - -0.0 2,969,629 - +0.3 2,969,979 + DVU2876 0.27 -0.2 2,970,152 + DVU2876 0.36 +0.1 2,970,165 - DVU2876 0.37 +0.5 2,970,174 - DVU2876 0.38 -0.2 2,970,255 + DVU2876 0.42 -0.2 2,970,255 + DVU2876 0.42 -0.6
Or see this region's nucleotide sequence