Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21840

Experiment: Glucose (C) and Betaine (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and Betaine (N); with TAPS
4,917,238	+		PFLU_RS21835	0.56	+2.6
4,917,239	-		PFLU_RS21835	0.56	+0.9
4,917,375	+		PFLU_RS21835	0.63	+1.3
4,917,375	+		PFLU_RS21835	0.63	+1.7
4,917,376	-		PFLU_RS21835	0.63	+1.3
4,917,376	-		PFLU_RS21835	0.63	+3.2
4,917,376	-		PFLU_RS21835	0.63	+2.4
4,917,521	+		PFLU_RS21835	0.70	+1.8
4,917,521	+		PFLU_RS21835	0.70	+1.3
4,917,521	+		PFLU_RS21835	0.70	+2.5
4,917,521	+		PFLU_RS21835	0.70	+2.6
4,917,521	+		PFLU_RS21835	0.70	+1.9
4,917,521	+		PFLU_RS21835	0.70	+2.3
4,917,522	-		PFLU_RS21835	0.70	+1.5
4,917,522	-		PFLU_RS21835	0.70	+2.4
4,917,522	-		PFLU_RS21835	0.70	+3.2
4,917,522	-		PFLU_RS21835	0.70	+1.7
4,917,522	-		PFLU_RS21835	0.70	+1.7
4,917,522	-		PFLU_RS21835	0.70	+2.1
4,917,522	-		PFLU_RS21835	0.70	+2.5
4,917,662	-		PFLU_RS21835	0.77	+2.5
4,917,662	-		PFLU_RS21835	0.77	+1.4
4,917,662	-		PFLU_RS21835	0.77	+2.4
4,917,740	+		PFLU_RS21835	0.81	+2.5
4,917,740	+		PFLU_RS21835	0.81	+1.5
4,917,740	+		PFLU_RS21835	0.81	+2.8
4,917,740	+		PFLU_RS21835	0.81	+4.0
4,917,740	+		PFLU_RS21835	0.81	+2.0
4,917,740	+		PFLU_RS21835	0.81	+1.4
4,917,740	+		PFLU_RS21835	0.81	+2.8
4,917,740	+		PFLU_RS21835	0.81	+1.6
4,917,741	-		PFLU_RS21835	0.81	+3.0
4,917,741	-		PFLU_RS21835	0.81	+2.5
4,917,741	-		PFLU_RS21835	0.81	+2.7
4,917,741	-		PFLU_RS21835	0.81	+1.7
4,917,741	-		PFLU_RS21835	0.81	+0.3
4,917,741	-		PFLU_RS21835	0.81	+3.2
4,917,741	-		PFLU_RS21835	0.81	+1.9
4,917,741	-		PFLU_RS21835	0.81	+2.3
4,917,757	+		PFLU_RS21835	0.82	+2.0
4,917,809	+		PFLU_RS21835	0.84	+0.8
4,917,809	+		PFLU_RS21835	0.84	+2.3
4,917,810	-		PFLU_RS21835	0.84	+1.7
4,917,873	+		PFLU_RS21835	0.87	+2.7
4,917,873	+		PFLU_RS21835	0.87	+2.7
4,917,874	-		PFLU_RS21835	0.87	+1.6
4,917,874	-		PFLU_RS21835	0.87	+1.8
4,917,889	+		PFLU_RS21835	0.88	+2.4
4,917,927	+		PFLU_RS21835	0.90	+2.1
4,917,927	+		PFLU_RS21835	0.90	+2.6
4,917,927	+		PFLU_RS21835	0.90	+3.1
4,917,927	+		PFLU_RS21835	0.90	+2.2
4,917,927	+		PFLU_RS21835	0.90	+1.3
4,917,928	-				+1.7
4,917,928	-				+2.8
4,917,936	+				+1.7
4,917,936	+				+1.7
4,917,936	+				+2.4
4,917,936	+				+2.7
4,917,937	-				+2.6
4,917,937	-				+2.8
4,917,937	-				+1.7
4,917,991	-				+1.7
4,918,035	+				+2.2
4,918,035	+				+1.2
4,918,035	+				+3.4
4,918,036	-				+1.7
4,918,066	+				+2.4
4,918,066	+				+2.6
4,918,067	-				+2.6
4,918,067	-				+1.6
4,918,067	-				+2.6
4,918,067	-				+3.5
4,918,099	+				+2.2
4,918,144	+				+2.9
4,918,144	+				+1.3
4,918,144	+				+1.4
4,918,144	+				+1.9
4,918,144	+				+2.0
4,918,144	+				+2.3
4,918,145	-				-0.1
4,918,145	-				+0.3
4,918,146	+				+2.7
4,918,146	+				+1.3
4,918,146	+				+4.2
4,918,146	+				+2.8
4,918,146	+				+0.9
4,918,146	+				+3.4
4,918,146	+				+2.7
4,918,146	+				+2.2
4,918,146	+				+1.9
4,918,146	+				+2.4
4,918,146	+				-0.1
4,918,146	+				+1.6
4,918,146	+				+1.9
4,918,146	+				+1.1
4,918,146	+				+1.8
4,918,146	+				+1.9
4,918,146	+				+2.7
4,918,146	+				+1.5
4,918,146	+				+2.0
4,918,146	+				+1.8
4,918,146	+				+2.1
4,918,147	-				+0.3
4,918,147	-				-0.1
4,918,147	-				-0.2
4,918,147	-				+0.3
4,918,147	-				-1.7
4,918,147	-				-0.1
4,918,147	-				-0.6
4,918,147	-				-0.3
4,918,147	-				+0.9
4,918,174	+				+0.6
4,918,174	+				+0.2
4,918,174	+				+0.5
4,918,174	+				-0.1
4,918,174	+				+2.2
4,918,174	+				+0.4
4,918,175	-				-1.1
4,918,175	-				+1.0
4,918,175	-				-0.7
4,918,175	-				-1.7
4,918,175	-				+0.9
4,918,183	+				+1.6
4,918,183	+				+0.0
4,918,184	-				+0.2
4,918,199	+				-0.5
4,918,200	-				-2.3
4,918,225	+				+2.5
4,918,225	+				+0.9
4,918,226	-				-0.9
4,918,243	+				+2.2
4,918,266	+				+0.7
4,918,267	-				+0.9
4,918,267	-				+2.6
4,918,307	+		PFLU_RS21840	0.13	+2.2
4,918,309	+		PFLU_RS21840	0.13	+2.1
4,918,309	+		PFLU_RS21840	0.13	+2.0
4,918,310	-		PFLU_RS21840	0.13	+1.9
4,918,310	-		PFLU_RS21840	0.13	+2.6
4,918,361	-		PFLU_RS21840	0.17	+2.0
4,918,369	+		PFLU_RS21840	0.18	+2.3
4,918,369	+		PFLU_RS21840	0.18	+1.9
4,918,369	+		PFLU_RS21840	0.18	+0.9
4,918,369	+		PFLU_RS21840	0.18	+1.9
4,918,369	+		PFLU_RS21840	0.18	+1.8
4,918,369	+		PFLU_RS21840	0.18	+0.8
4,918,369	+		PFLU_RS21840	0.18	+0.8
4,918,369	+		PFLU_RS21840	0.18	+0.7
4,918,369	+		PFLU_RS21840	0.18	+1.3
4,918,369	+		PFLU_RS21840	0.18	+1.4
4,918,369	+		PFLU_RS21840	0.18	+0.6
4,918,370	-		PFLU_RS21840	0.18	+1.4
4,918,370	-		PFLU_RS21840	0.18	+1.6
4,918,370	-		PFLU_RS21840	0.18	+0.3
4,918,370	-		PFLU_RS21840	0.18	+0.2
4,918,482	-		PFLU_RS21840	0.27	+1.7
4,918,482	-		PFLU_RS21840	0.27	+1.5
4,918,482	-		PFLU_RS21840	0.27	+1.5
4,918,520	+		PFLU_RS21840	0.30	+1.4
4,918,521	-		PFLU_RS21840	0.30	+0.4
4,918,558	+		PFLU_RS21840	0.33	+0.4
4,918,558	+		PFLU_RS21840	0.33	+2.9
4,918,558	+		PFLU_RS21840	0.33	+2.3
4,918,558	+		PFLU_RS21840	0.33	+1.7
4,918,558	+		PFLU_RS21840	0.33	+1.6
4,918,559	-		PFLU_RS21840	0.33	+1.6
4,918,559	-		PFLU_RS21840	0.33	+0.8
4,918,572	-		PFLU_RS21840	0.34	+1.6
4,918,687	+		PFLU_RS21840	0.43	+2.1
4,918,688	-		PFLU_RS21840	0.43	+1.1
4,918,763	+		PFLU_RS21840	0.49	+2.2
4,918,763	+		PFLU_RS21840	0.49	+1.2
4,918,763	+		PFLU_RS21840	0.49	+1.9
4,918,930	+		PFLU_RS21840	0.62	+1.6
4,919,164	+		PFLU_RS21840	0.80	+1.3
4,919,164	+		PFLU_RS21840	0.80	+1.9
4,919,164	+		PFLU_RS21840	0.80	+3.2
4,919,164	+		PFLU_RS21840	0.80	+2.0
4,919,165	-		PFLU_RS21840	0.80	+2.8
4,919,165	-		PFLU_RS21840	0.80	+2.4
4,919,165	-		PFLU_RS21840	0.80	+2.5
4,919,165	-		PFLU_RS21840	0.80	+3.4
4,919,165	-		PFLU_RS21840	0.80	+1.2
4,919,176	+		PFLU_RS21840	0.81	+3.2
4,919,176	+		PFLU_RS21840	0.81	+1.2
4,919,176	+		PFLU_RS21840	0.81	-0.5
4,919,339	+				+2.2
4,919,339	+				+2.3
4,919,340	-				+2.0
4,919,359	+				+2.0
4,919,359	+				+1.7
4,919,359	+				+1.5
4,919,359	+				+2.6
4,919,359	+				+1.8
4,919,359	+				+2.7
4,919,360	-				+2.6
4,919,360	-				+2.1
4,919,385	+				+0.5
4,919,385	+				+0.7
4,919,385	+				+1.9
4,919,385	+				+1.9
4,919,385	+				+0.0
4,919,385	+				+1.9
4,919,385	+				+1.2
4,919,385	+				+3.4
4,919,385	+				+0.7
4,919,386	-				+0.3
4,919,386	-				-1.4
4,919,386	-				+1.4
4,919,386	-				-1.5
4,919,386	-				+1.0
4,919,386	-				-1.3
4,919,386	-				+2.0
4,919,386	-				+0.7
4,919,386	-				+3.0
4,919,386	-				+2.0
4,919,386	-				+0.7
4,919,386	-				+0.0
4,919,386	-				+1.0
4,919,387	+				+3.0
4,919,387	+				+3.0
4,919,387	+				+2.7
4,919,387	+				+2.7
4,919,387	+				+1.5
4,919,387	+				+2.0
4,919,387	+				+2.9
4,919,387	+				+1.4
4,919,388	-				+2.0
4,919,388	-				+1.9
4,919,388	-				+2.9
4,919,388	-				+2.4
4,919,388	-				+2.4
4,919,402	+				+2.0
4,919,402	+				+2.0
4,919,402	+				+2.2
4,919,649	+		PFLU_RS21845	0.21	+1.5
4,919,650	-		PFLU_RS21845	0.21	+2.6
4,919,733	+		PFLU_RS21845	0.28	+2.6
4,919,734	-		PFLU_RS21845	0.28	+2.0
4,919,810	+		PFLU_RS21845	0.35	+2.7
4,919,811	-		PFLU_RS21845	0.35	+2.2
4,919,811	-		PFLU_RS21845	0.35	+2.1
4,919,811	-		PFLU_RS21845	0.35	+1.5
4,919,811	-		PFLU_RS21845	0.35	+1.0
4,919,811	-		PFLU_RS21845	0.35	+2.3
4,919,811	-		PFLU_RS21845	0.35	+4.4
4,919,811	-		PFLU_RS21845	0.35	+2.2
4,919,811	-		PFLU_RS21845	0.35	+2.5
4,920,022	-		PFLU_RS21845	0.54	+2.3
4,920,116	+		PFLU_RS21845	0.63	+2.4
4,920,117	-		PFLU_RS21845	0.63	+2.6
4,920,117	-		PFLU_RS21845	0.63	+2.6
4,920,132	+		PFLU_RS21845	0.64	+3.4
4,920,133	-		PFLU_RS21845	0.64	+3.2
4,920,133	-		PFLU_RS21845	0.64	+1.9
4,920,184	-		PFLU_RS21845	0.69	+3.3
4,920,184	-		PFLU_RS21845	0.69	+2.2
4,920,201	+		PFLU_RS21845	0.71	+2.1
4,920,202	-		PFLU_RS21845	0.71	+1.6
4,920,202	-		PFLU_RS21845	0.71	+1.7
4,920,301	+		PFLU_RS21845	0.80	+2.4
4,920,378	+		PFLU_RS21845	0.87	+2.6