Experiment: MoLS4 with Butyrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trxB-1 and DVU0378 are separated by 18 nucleotides DVU0378 and DVU0379 are separated by 22 nucleotides DVU0379 and DVU0380 are separated by 43 nucleotides
DVU0377: trxB-1 - thioredoxin reductase (TIGR), at 427,507 to 428,424
trxB-1
DVU0378: DVU0378 - thioredoxin, putative (TIGR), at 428,443 to 428,757
DVU0378
DVU0379: DVU0379 - transcriptional regulator, putative (TIGR), at 428,780 to 429,457
DVU0379
DVU0380: DVU0380 - sulfatase, putative (TIGR), at 429,501 to 431,063
DVU0380
Position (kb) 428
429
430 Strain fitness (log2 ratio) -2
-1
0
1 at 427.785 kb on + strand, within trxB-1 at 427.795 kb on + strand, within trxB-1 at 427.950 kb on - strand, within trxB-1 at 427.951 kb on + strand, within trxB-1 at 428.116 kb on + strand, within trxB-1 at 428.143 kb on - strand, within trxB-1 at 428.210 kb on - strand, within trxB-1 at 428.285 kb on + strand, within trxB-1 at 428.568 kb on + strand, within DVU0378 at 428.568 kb on + strand, within DVU0378 at 428.651 kb on + strand, within DVU0378 at 428.664 kb on + strand, within DVU0378 at 428.786 kb on - strand at 428.940 kb on + strand, within DVU0379 at 428.949 kb on + strand, within DVU0379 at 428.957 kb on - strand, within DVU0379 at 429.022 kb on - strand, within DVU0379 at 429.077 kb on - strand, within DVU0379 at 429.227 kb on - strand, within DVU0379 at 429.272 kb on - strand, within DVU0379 at 429.317 kb on + strand, within DVU0379 at 429.402 kb on - strand at 429.411 kb on - strand at 429.500 kb on + strand at 429.628 kb on + strand at 429.671 kb on - strand, within DVU0380 at 429.859 kb on + strand, within DVU0380 at 429.890 kb on + strand, within DVU0380 at 429.890 kb on + strand, within DVU0380 at 429.890 kb on + strand, within DVU0380 at 429.890 kb on + strand, within DVU0380 at 429.890 kb on + strand, within DVU0380 at 429.890 kb on + strand, within DVU0380 at 429.991 kb on + strand, within DVU0380 at 430.026 kb on + strand, within DVU0380 at 430.082 kb on - strand, within DVU0380 at 430.087 kb on - strand, within DVU0380 at 430.115 kb on + strand, within DVU0380 at 430.115 kb on + strand, within DVU0380 at 430.123 kb on - strand, within DVU0380 at 430.123 kb on - strand, within DVU0380 at 430.123 kb on - strand, within DVU0380 at 430.123 kb on - strand, within DVU0380 at 430.123 kb on - strand, within DVU0380 at 430.137 kb on + strand, within DVU0380 at 430.137 kb on + strand, within DVU0380 at 430.169 kb on - strand, within DVU0380 at 430.298 kb on - strand, within DVU0380 at 430.368 kb on - strand, within DVU0380 at 430.417 kb on - strand, within DVU0380
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Butyrate 10mM remove 427,785 + trxB-1 DVU0377 0.30 -0.8 427,795 + trxB-1 DVU0377 0.31 -0.3 427,950 - trxB-1 DVU0377 0.48 -0.5 427,951 + trxB-1 DVU0377 0.48 +0.7 428,116 + trxB-1 DVU0377 0.66 -0.3 428,143 - trxB-1 DVU0377 0.69 -0.1 428,210 - trxB-1 DVU0377 0.77 +0.0 428,285 + trxB-1 DVU0377 0.85 -1.2 428,568 + DVU0378 0.40 +0.7 428,568 + DVU0378 0.40 +0.4 428,651 + DVU0378 0.66 -1.7 428,664 + DVU0378 0.70 +0.1 428,786 - -0.7 428,940 + DVU0379 0.24 -1.0 428,949 + DVU0379 0.25 -0.2 428,957 - DVU0379 0.26 -1.2 429,022 - DVU0379 0.36 -0.6 429,077 - DVU0379 0.44 -2.2 429,227 - DVU0379 0.66 -0.1 429,272 - DVU0379 0.73 -0.9 429,317 + DVU0379 0.79 -0.5 429,402 - -1.2 429,411 - +0.0 429,500 + -0.8 429,628 + +0.1 429,671 - DVU0380 0.11 -0.5 429,859 + DVU0380 0.23 -1.4 429,890 + DVU0380 0.25 -0.4 429,890 + DVU0380 0.25 -0.4 429,890 + DVU0380 0.25 -0.0 429,890 + DVU0380 0.25 +0.7 429,890 + DVU0380 0.25 -0.1 429,890 + DVU0380 0.25 -0.4 429,991 + DVU0380 0.31 +0.5 430,026 + DVU0380 0.34 -0.1 430,082 - DVU0380 0.37 -0.3 430,087 - DVU0380 0.37 +0.1 430,115 + DVU0380 0.39 +0.8 430,115 + DVU0380 0.39 +1.0 430,123 - DVU0380 0.40 -0.2 430,123 - DVU0380 0.40 -0.0 430,123 - DVU0380 0.40 +0.6 430,123 - DVU0380 0.40 +0.1 430,123 - DVU0380 0.40 -2.2 430,137 + DVU0380 0.41 -0.5 430,137 + DVU0380 0.41 +1.3 430,169 - DVU0380 0.43 -0.0 430,298 - DVU0380 0.51 -0.4 430,368 - DVU0380 0.55 +0.6 430,417 - DVU0380 0.59 -0.3
Or see this region's nucleotide sequence