Experiment: MoLS4 with Butyrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0203 and DVU0204 are separated by 17 nucleotides DVU0204 and DVU0205 overlap by 8 nucleotides DVU0205 and DVU0206 are separated by 2 nucleotides DVU0206 and DVU0207 overlap by 4 nucleotides DVU0207 and DVU0208 overlap by 4 nucleotides DVU0208 and DVU0209 overlap by 17 nucleotides
DVU0203: DVU0203 - conserved hypothetical protein (TIGR), at 247,843 to 248,391
DVU0203
DVU0204: DVU0204 - lipoprotein, putative (TIGR), at 248,409 to 248,819
DVU0204
DVU0205: DVU0205 - hypothetical protein (TIGR), at 248,812 to 248,979
DVU0205
DVU0206: DVU0206 - hypothetical protein (TIGR), at 248,982 to 249,575
DVU0206
DVU0207: DVU0207 - hypothetical protein (TIGR), at 249,572 to 249,898
DVU0207
DVU0208: DVU0208 - hypothetical protein (TIGR), at 249,895 to 250,452
DVU0208
DVU0209: DVU0209 - conserved hypothetical protein (TIGR), at 250,436 to 250,627
DVU0209
Position (kb) 248
249
250 Strain fitness (log2 ratio) -1
0
1 at 248.619 kb on + strand, within DVU0204 at 248.641 kb on + strand, within DVU0204 at 248.774 kb on + strand, within DVU0204 at 248.900 kb on - strand, within DVU0205 at 248.900 kb on - strand, within DVU0205 at 248.973 kb on + strand at 249.473 kb on - strand, within DVU0206 at 249.483 kb on - strand, within DVU0206 at 249.960 kb on + strand, within DVU0208 at 249.960 kb on + strand, within DVU0208 at 249.975 kb on + strand, within DVU0208 at 249.985 kb on - strand, within DVU0208 at 250.128 kb on + strand, within DVU0208 at 250.149 kb on - strand, within DVU0208 at 250.173 kb on - strand, within DVU0208 at 250.182 kb on - strand, within DVU0208
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Butyrate 10mM remove 248,619 + DVU0204 0.51 -0.7 248,641 + DVU0204 0.56 -0.5 248,774 + DVU0204 0.89 -0.2 248,900 - DVU0205 0.52 -0.6 248,900 - DVU0205 0.52 -0.8 248,973 + -1.0 249,473 - DVU0206 0.83 +0.1 249,483 - DVU0206 0.84 +0.2 249,960 + DVU0208 0.12 -0.0 249,960 + DVU0208 0.12 -0.6 249,975 + DVU0208 0.14 -0.3 249,985 - DVU0208 0.16 -1.6 250,128 + DVU0208 0.42 -1.0 250,149 - DVU0208 0.46 -0.1 250,173 - DVU0208 0.50 -0.3 250,182 - DVU0208 0.51 -0.6
Or see this region's nucleotide sequence