Experiment: MoLS4 with Butyrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0195 and DORF26313 overlap by 8 nucleotides DORF26313 and DVU0196 are separated by 362 nucleotides DVU0196 and DVU0197 are separated by 3 nucleotides
DVU0194: DVU0194 - terminase, large subunit, putative (TIGR), at 239,489 to 241,447
DVU0194
DVU0195: DVU0195 - hypothetical protein (TIGR), at 241,444 to 241,662
DVU0195
DORF26313: DORF26313 - no description, at 241,655 to 242,083
DORF26313
DVU0196: DVU0196 - hypothetical protein (TIGR), at 242,446 to 242,586
DVU0196
DVU0197: DVU0197 - phage portal protein, lambda family (TIGR), at 242,590 to 244,290
DVU0197
Position (kb) 242
243 Strain fitness (log2 ratio) -2
-1
0
1
2 at 241.449 kb on - strand at 241.449 kb on - strand at 241.580 kb on + strand, within DVU0195 at 241.588 kb on - strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.604 kb on + strand, within DVU0195 at 241.612 kb on - strand, within DVU0195 at 241.726 kb on + strand, within DORF26313 at 241.726 kb on - strand, within DORF26313 at 241.783 kb on + strand, within DORF26313 at 241.976 kb on - strand, within DORF26313 at 242.031 kb on + strand, within DORF26313 at 242.034 kb on - strand, within DORF26313 at 242.050 kb on - strand at 242.075 kb on + strand at 242.077 kb on + strand at 242.077 kb on + strand at 242.140 kb on - strand at 242.162 kb on - strand at 242.181 kb on - strand at 242.206 kb on - strand at 242.206 kb on - strand at 242.330 kb on - strand at 242.347 kb on + strand at 242.347 kb on + strand at 242.442 kb on + strand at 242.543 kb on + strand, within DVU0196 at 242.657 kb on + strand at 242.690 kb on - strand at 242.754 kb on + strand at 242.780 kb on + strand, within DVU0197 at 242.788 kb on - strand, within DVU0197 at 242.788 kb on - strand, within DVU0197 at 242.802 kb on - strand, within DVU0197 at 242.873 kb on + strand, within DVU0197 at 242.950 kb on - strand, within DVU0197 at 243.025 kb on + strand, within DVU0197 at 243.048 kb on + strand, within DVU0197 at 243.121 kb on + strand, within DVU0197 at 243.168 kb on + strand, within DVU0197 at 243.217 kb on + strand, within DVU0197 at 243.396 kb on + strand, within DVU0197 at 243.399 kb on - strand, within DVU0197 at 243.399 kb on - strand, within DVU0197 at 243.407 kb on + strand, within DVU0197
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Butyrate 10mM remove 241,449 - -1.9 241,449 - +0.1 241,580 + DVU0195 0.62 +0.1 241,588 - DVU0195 0.66 +0.2 241,604 + DVU0195 0.73 +0.1 241,604 + DVU0195 0.73 +1.7 241,604 + DVU0195 0.73 -0.0 241,604 + DVU0195 0.73 -0.3 241,612 - DVU0195 0.77 +2.4 241,726 + DORF26313 0.17 +0.3 241,726 - DORF26313 0.17 -0.1 241,783 + DORF26313 0.30 -2.3 241,976 - DORF26313 0.75 -0.1 242,031 + DORF26313 0.88 -0.3 242,034 - DORF26313 0.88 -0.5 242,050 - -0.2 242,075 + -0.4 242,077 + -0.3 242,077 + -1.3 242,140 - -0.1 242,162 - -0.7 242,181 - -0.1 242,206 - -1.0 242,206 - -0.1 242,330 - +0.2 242,347 + -0.4 242,347 + -0.4 242,442 + +0.0 242,543 + DVU0196 0.69 +0.4 242,657 + +0.2 242,690 - -0.7 242,754 + -0.5 242,780 + DVU0197 0.11 -0.0 242,788 - DVU0197 0.12 -0.4 242,788 - DVU0197 0.12 +0.2 242,802 - DVU0197 0.12 -0.0 242,873 + DVU0197 0.17 +0.6 242,950 - DVU0197 0.21 -1.6 243,025 + DVU0197 0.26 +0.2 243,048 + DVU0197 0.27 -0.2 243,121 + DVU0197 0.31 -0.6 243,168 + DVU0197 0.34 +2.4 243,217 + DVU0197 0.37 +0.1 243,396 + DVU0197 0.47 +1.2 243,399 - DVU0197 0.48 +0.4 243,399 - DVU0197 0.48 +0.5 243,407 + DVU0197 0.48 +0.2
Or see this region's nucleotide sequence