Experiment: MoLS4 with Butyrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2286 and DVU2287 are separated by 3 nucleotides DVU2287 and DVU2288 are separated by 12 nucleotides DVU2288 and b2488 are separated by 1 nucleotides
DVU2286: DVU2286 - hydrogenase, CooM subunit, putative (TIGR), at 2,377,289 to 2,381,050
DVU2286
DVU2287: DVU2287 - hydrogenase, CooK subunit, selenocysteine-containing, putative (TIGR), at 2,381,054 to 2,382,019
DVU2287
DVU2288: DVU2288 - hydrogenase, CooL subunit, putative (TIGR), at 2,382,032 to 2,382,466
DVU2288
DVU2289: b2488 - hydrogenase, CooX subunit, putative (TIGR), at 2,382,468 to 2,383,103
b2488
Position (kb)
2381
2382
2383 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2380.060 kb on + strand, within DVU2286 at 2380.068 kb on - strand, within DVU2286 at 2380.126 kb on - strand, within DVU2286 at 2380.254 kb on - strand, within DVU2286 at 2380.259 kb on - strand, within DVU2286 at 2380.270 kb on + strand, within DVU2286 at 2380.280 kb on + strand, within DVU2286 at 2380.359 kb on - strand, within DVU2286 at 2380.554 kb on + strand, within DVU2286 at 2380.635 kb on + strand, within DVU2286 at 2381.042 kb on - strand at 2381.044 kb on + strand at 2381.131 kb on + strand at 2381.139 kb on - strand at 2381.346 kb on - strand, within DVU2287 at 2381.490 kb on - strand, within DVU2287 at 2381.605 kb on + strand, within DVU2287 at 2382.243 kb on - strand, within DVU2288 at 2382.750 kb on - strand, within b2488 at 2382.926 kb on + strand, within b2488
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Butyrate 10mM remove 2,380,060 + DVU2286 0.74 -1.5 2,380,068 - DVU2286 0.74 -0.7 2,380,126 - DVU2286 0.75 +0.6 2,380,254 - DVU2286 0.79 +0.8 2,380,259 - DVU2286 0.79 -0.2 2,380,270 + DVU2286 0.79 -0.7 2,380,280 + DVU2286 0.80 -0.2 2,380,359 - DVU2286 0.82 -1.5 2,380,554 + DVU2286 0.87 -1.4 2,380,635 + DVU2286 0.89 +1.3 2,381,042 - +0.2 2,381,044 + +2.0 2,381,131 + -0.2 2,381,139 - -0.0 2,381,346 - DVU2287 0.30 -1.5 2,381,490 - DVU2287 0.45 +0.3 2,381,605 + DVU2287 0.57 -2.5 2,382,243 - DVU2288 0.49 -0.3 2,382,750 - b2488 DVU2289 0.44 -0.2 2,382,926 + b2488 DVU2289 0.72 -1.1
Or see this region's nucleotide sequence