Experiment: MoLS4 with Butyrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0972 and DVU0973 overlap by 4 nucleotides DVU0973 and DVU0974 are separated by 98 nucleotides DVU0974 and DVU0975 are separated by 32 nucleotides
DVU0972: DVU0972 - HD domain protein (TIGR), at 1,068,370 to 1,069,635
DVU0972
DVU0973: DVU0973 - 4-hydroxybenzoate octaprenyltransferase, putative (TIGR), at 1,069,632 to 1,070,501
DVU0973
DVU0974: DVU0974 - hypothetical protein (TIGR), at 1,070,600 to 1,070,938
DVU0974
DVU0975: DVU0975 - conserved hypothetical protein (TIGR), at 1,070,971 to 1,071,531
DVU0975
Position (kb)
1069
1070
1071 Strain fitness (log2 ratio)
-1
0
1 at 1068.687 kb on + strand, within DVU0972 at 1068.695 kb on - strand, within DVU0972 at 1068.767 kb on + strand, within DVU0972 at 1068.767 kb on + strand, within DVU0972 at 1068.783 kb on - strand, within DVU0972 at 1068.858 kb on - strand, within DVU0972 at 1068.860 kb on + strand, within DVU0972 at 1068.948 kb on - strand, within DVU0972 at 1068.948 kb on - strand, within DVU0972 at 1069.105 kb on + strand, within DVU0972 at 1069.214 kb on + strand, within DVU0972 at 1069.372 kb on - strand, within DVU0972 at 1069.374 kb on - strand, within DVU0972 at 1069.605 kb on - strand at 1069.620 kb on + strand at 1070.405 kb on + strand, within DVU0973 at 1070.552 kb on + strand at 1070.607 kb on + strand at 1070.615 kb on - strand at 1070.655 kb on - strand, within DVU0974 at 1070.896 kb on + strand, within DVU0974 at 1070.897 kb on - strand, within DVU0974 at 1071.027 kb on - strand, within DVU0975 at 1071.066 kb on - strand, within DVU0975 at 1071.122 kb on + strand, within DVU0975 at 1071.122 kb on + strand, within DVU0975 at 1071.414 kb on + strand, within DVU0975
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Butyrate 10mM remove 1,068,687 + DVU0972 0.25 -0.1 1,068,695 - DVU0972 0.26 +0.7 1,068,767 + DVU0972 0.31 -0.2 1,068,767 + DVU0972 0.31 -0.8 1,068,783 - DVU0972 0.33 -0.4 1,068,858 - DVU0972 0.39 -0.9 1,068,860 + DVU0972 0.39 -1.2 1,068,948 - DVU0972 0.46 -0.4 1,068,948 - DVU0972 0.46 +0.6 1,069,105 + DVU0972 0.58 +0.2 1,069,214 + DVU0972 0.67 +0.6 1,069,372 - DVU0972 0.79 -0.4 1,069,374 - DVU0972 0.79 -0.6 1,069,605 - -0.3 1,069,620 + -0.7 1,070,405 + DVU0973 0.89 -1.4 1,070,552 + +0.0 1,070,607 + -0.1 1,070,615 - -0.2 1,070,655 - DVU0974 0.16 +0.3 1,070,896 + DVU0974 0.87 -0.1 1,070,897 - DVU0974 0.88 -0.0 1,071,027 - DVU0975 0.10 +0.9 1,071,066 - DVU0975 0.17 -1.4 1,071,122 + DVU0975 0.27 +0.5 1,071,122 + DVU0975 0.27 +1.2 1,071,414 + DVU0975 0.79 +0.2
Or see this region's nucleotide sequence