Experiment: MoLS4 with Butyrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrdH and ftrB overlap by 4 nucleotides ftrB and DVU0885 are separated by 441 nucleotides DVU0885 and DVU0886 are separated by 50 nucleotides DVU0886 and mltA are separated by 54 nucleotides
DVU0883: nrdH - glutaredoxin, putative (TIGR), at 974,481 to 974,738
nrdH
DVU0884: ftrB - conserved hypothetical protein (TIGR), at 974,735 to 975,079
ftrB
DVU0885: DVU0885 - amidohydrolase family protein (TIGR), at 975,521 to 976,309
DVU0885
DVU0886: DVU0886 - thioesterase family protein (TIGR), at 976,360 to 976,770
DVU0886
DVU0887: mltA - transglycosylase, putative (TIGR), at 976,825 to 978,099
mltA
Position (kb) 975
976
977 Strain fitness (log2 ratio) -2
-1
0
1 at 974.521 kb on - strand, within nrdH at 974.538 kb on - strand, within nrdH at 974.647 kb on - strand, within nrdH at 974.647 kb on - strand, within nrdH at 974.709 kb on + strand, within nrdH at 974.772 kb on - strand, within ftrB at 974.814 kb on - strand, within ftrB at 974.822 kb on + strand, within ftrB at 974.884 kb on - strand, within ftrB at 974.920 kb on + strand, within ftrB at 974.928 kb on - strand, within ftrB at 974.929 kb on - strand, within ftrB at 975.027 kb on - strand, within ftrB at 975.027 kb on - strand, within ftrB at 975.250 kb on + strand at 975.399 kb on + strand at 975.399 kb on - strand at 975.412 kb on + strand at 975.420 kb on - strand at 975.593 kb on + strand at 975.685 kb on + strand, within DVU0885 at 975.691 kb on + strand, within DVU0885 at 975.692 kb on - strand, within DVU0885 at 975.740 kb on - strand, within DVU0885 at 975.740 kb on - strand, within DVU0885 at 975.753 kb on + strand, within DVU0885 at 975.768 kb on + strand, within DVU0885 at 975.951 kb on - strand, within DVU0885 at 975.966 kb on + strand, within DVU0885 at 975.995 kb on + strand, within DVU0885 at 976.001 kb on - strand, within DVU0885 at 976.001 kb on - strand, within DVU0885 at 976.045 kb on + strand, within DVU0885 at 976.067 kb on + strand, within DVU0885 at 976.074 kb on + strand, within DVU0885 at 976.124 kb on - strand, within DVU0885 at 976.151 kb on - strand, within DVU0885 at 976.163 kb on + strand, within DVU0885 at 976.171 kb on - strand, within DVU0885 at 976.197 kb on + strand, within DVU0885 at 976.230 kb on + strand, within DVU0885 at 976.276 kb on + strand at 976.371 kb on - strand at 976.394 kb on + strand at 976.434 kb on - strand, within DVU0886 at 976.497 kb on - strand, within DVU0886 at 976.524 kb on + strand, within DVU0886 at 976.534 kb on + strand, within DVU0886 at 976.551 kb on + strand, within DVU0886 at 976.557 kb on - strand, within DVU0886 at 976.813 kb on + strand at 976.821 kb on - strand at 976.995 kb on + strand, within mltA at 977.080 kb on - strand, within mltA at 977.159 kb on - strand, within mltA at 977.164 kb on + strand, within mltA at 977.233 kb on + strand, within mltA at 977.238 kb on + strand, within mltA at 977.254 kb on + strand, within mltA
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Butyrate 10mM remove 974,521 - nrdH DVU0883 0.16 -0.1 974,538 - nrdH DVU0883 0.22 -0.0 974,647 - nrdH DVU0883 0.64 -0.2 974,647 - nrdH DVU0883 0.64 -1.0 974,709 + nrdH DVU0883 0.88 -0.4 974,772 - ftrB DVU0884 0.11 +0.9 974,814 - ftrB DVU0884 0.23 +0.5 974,822 + ftrB DVU0884 0.25 +0.1 974,884 - ftrB DVU0884 0.43 -0.5 974,920 + ftrB DVU0884 0.54 -0.3 974,928 - ftrB DVU0884 0.56 +0.7 974,929 - ftrB DVU0884 0.56 -0.2 975,027 - ftrB DVU0884 0.85 -0.5 975,027 - ftrB DVU0884 0.85 -0.1 975,250 + -0.0 975,399 + -0.5 975,399 - -0.0 975,412 + -0.6 975,420 - -0.0 975,593 + -1.7 975,685 + DVU0885 0.21 -0.9 975,691 + DVU0885 0.22 -1.1 975,692 - DVU0885 0.22 -1.4 975,740 - DVU0885 0.28 -2.4 975,740 - DVU0885 0.28 -1.4 975,753 + DVU0885 0.29 -1.1 975,768 + DVU0885 0.31 -1.6 975,951 - DVU0885 0.54 -2.3 975,966 + DVU0885 0.56 +0.2 975,995 + DVU0885 0.60 +0.4 976,001 - DVU0885 0.61 -1.1 976,001 - DVU0885 0.61 -1.4 976,045 + DVU0885 0.66 -0.9 976,067 + DVU0885 0.69 -1.0 976,074 + DVU0885 0.70 -1.0 976,124 - DVU0885 0.76 -1.0 976,151 - DVU0885 0.80 -0.5 976,163 + DVU0885 0.81 -1.4 976,171 - DVU0885 0.82 +1.2 976,197 + DVU0885 0.86 -1.0 976,230 + DVU0885 0.90 -0.9 976,276 + -1.4 976,371 - +0.0 976,394 + -0.2 976,434 - DVU0886 0.18 -0.5 976,497 - DVU0886 0.33 -0.8 976,524 + DVU0886 0.40 -0.9 976,534 + DVU0886 0.42 -0.1 976,551 + DVU0886 0.46 -0.8 976,557 - DVU0886 0.48 -0.1 976,813 + -0.0 976,821 - +0.6 976,995 + mltA DVU0887 0.13 -0.6 977,080 - mltA DVU0887 0.20 +0.1 977,159 - mltA DVU0887 0.26 -0.8 977,164 + mltA DVU0887 0.27 -0.0 977,233 + mltA DVU0887 0.32 -1.3 977,238 + mltA DVU0887 0.32 +0.6 977,254 + mltA DVU0887 0.34 +0.3
Or see this region's nucleotide sequence