Experiment: MoLS4 with Butyrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0976 and DORF8571 are separated by 126 nucleotides DORF8571 and DVU0978 are separated by 170 nucleotides
DVU0976: DVU0976 - response regulator (TIGR), at 1,071,674 to 1,072,837
DVU0976
DORF8571: DORF8571 - SEED: FIG00603598: hypothetical protein, at 1,072,964 to 1,073,371
DORF8571
DVU0978: DVU0978 - ABC transporter, periplasmic substrate-binding protein, putative (TIGR), at 1,073,542 to 1,074,396
DVU0978
Position (kb)
1072
1073
1074 Strain fitness (log2 ratio)
-2
-1
0
1 at 1071.981 kb on - strand, within DVU0976 at 1072.017 kb on + strand, within DVU0976 at 1072.025 kb on - strand, within DVU0976 at 1072.109 kb on + strand, within DVU0976 at 1072.117 kb on - strand, within DVU0976 at 1072.117 kb on - strand, within DVU0976 at 1072.289 kb on + strand, within DVU0976 at 1072.331 kb on - strand, within DVU0976 at 1072.431 kb on + strand, within DVU0976 at 1072.456 kb on + strand, within DVU0976 at 1072.456 kb on - strand, within DVU0976 at 1072.464 kb on + strand, within DVU0976 at 1072.485 kb on + strand, within DVU0976 at 1072.485 kb on + strand, within DVU0976 at 1072.610 kb on + strand, within DVU0976 at 1072.794 kb on + strand at 1072.812 kb on - strand at 1073.099 kb on + strand, within DORF8571 at 1073.418 kb on - strand at 1073.430 kb on + strand at 1073.621 kb on - strand at 1073.669 kb on + strand, within DVU0978 at 1073.686 kb on - strand, within DVU0978 at 1073.689 kb on + strand, within DVU0978 at 1073.726 kb on + strand, within DVU0978 at 1073.726 kb on + strand, within DVU0978 at 1073.731 kb on + strand, within DVU0978 at 1073.734 kb on - strand, within DVU0978 at 1073.747 kb on + strand, within DVU0978 at 1073.844 kb on + strand, within DVU0978 at 1074.005 kb on - strand, within DVU0978 at 1074.046 kb on + strand, within DVU0978 at 1074.052 kb on - strand, within DVU0978 at 1074.063 kb on + strand, within DVU0978 at 1074.082 kb on + strand, within DVU0978 at 1074.192 kb on + strand, within DVU0978 at 1074.192 kb on + strand, within DVU0978 at 1074.192 kb on + strand, within DVU0978 at 1074.240 kb on - strand, within DVU0978 at 1074.355 kb on - strand at 1074.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Butyrate 10mM remove 1,071,981 - DVU0976 0.26 -0.6 1,072,017 + DVU0976 0.29 +0.5 1,072,025 - DVU0976 0.30 +0.0 1,072,109 + DVU0976 0.37 -0.3 1,072,117 - DVU0976 0.38 +0.4 1,072,117 - DVU0976 0.38 -0.2 1,072,289 + DVU0976 0.53 -0.8 1,072,331 - DVU0976 0.56 -0.2 1,072,431 + DVU0976 0.65 +0.2 1,072,456 + DVU0976 0.67 -0.5 1,072,456 - DVU0976 0.67 +1.1 1,072,464 + DVU0976 0.68 -0.4 1,072,485 + DVU0976 0.70 -0.4 1,072,485 + DVU0976 0.70 +0.0 1,072,610 + DVU0976 0.80 -1.1 1,072,794 + -0.5 1,072,812 - +0.7 1,073,099 + DORF8571 0.33 -1.9 1,073,418 - -0.6 1,073,430 + -0.6 1,073,621 - -0.1 1,073,669 + DVU0978 0.15 -0.0 1,073,686 - DVU0978 0.17 +1.2 1,073,689 + DVU0978 0.17 -0.5 1,073,726 + DVU0978 0.22 +0.6 1,073,726 + DVU0978 0.22 +1.1 1,073,731 + DVU0978 0.22 -1.0 1,073,734 - DVU0978 0.22 +0.2 1,073,747 + DVU0978 0.24 -0.2 1,073,844 + DVU0978 0.35 +1.2 1,074,005 - DVU0978 0.54 -2.0 1,074,046 + DVU0978 0.59 -0.8 1,074,052 - DVU0978 0.60 -0.3 1,074,063 + DVU0978 0.61 +0.5 1,074,082 + DVU0978 0.63 -0.3 1,074,192 + DVU0978 0.76 -0.8 1,074,192 + DVU0978 0.76 -0.5 1,074,192 + DVU0978 0.76 -1.3 1,074,240 - DVU0978 0.82 -0.7 1,074,355 - +0.1 1,074,355 - -1.1
Or see this region's nucleotide sequence