Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF8571

Experiment: MoLS4 with Butyrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0976 and DORF8571 are separated by 126 nucleotidesDORF8571 and DVU0978 are separated by 170 nucleotides DVU0976: DVU0976 - response regulator (TIGR), at 1,071,674 to 1,072,837 DVU0976 DORF8571: DORF8571 - SEED: FIG00603598: hypothetical protein, at 1,072,964 to 1,073,371 DORF8571 DVU0978: DVU0978 - ABC transporter, periplasmic substrate-binding protein, putative (TIGR), at 1,073,542 to 1,074,396 DVU0978 Position (kb) 1072 1073 1074Strain fitness (log2 ratio) -2 -1 0 1at 1071.981 kb on - strand, within DVU0976at 1072.017 kb on + strand, within DVU0976at 1072.025 kb on - strand, within DVU0976at 1072.109 kb on + strand, within DVU0976at 1072.117 kb on - strand, within DVU0976at 1072.117 kb on - strand, within DVU0976at 1072.289 kb on + strand, within DVU0976at 1072.331 kb on - strand, within DVU0976at 1072.431 kb on + strand, within DVU0976at 1072.456 kb on + strand, within DVU0976at 1072.456 kb on - strand, within DVU0976at 1072.464 kb on + strand, within DVU0976at 1072.485 kb on + strand, within DVU0976at 1072.485 kb on + strand, within DVU0976at 1072.610 kb on + strand, within DVU0976at 1072.794 kb on + strandat 1072.812 kb on - strandat 1073.099 kb on + strand, within DORF8571at 1073.418 kb on - strandat 1073.430 kb on + strandat 1073.621 kb on - strandat 1073.669 kb on + strand, within DVU0978at 1073.686 kb on - strand, within DVU0978at 1073.689 kb on + strand, within DVU0978at 1073.726 kb on + strand, within DVU0978at 1073.726 kb on + strand, within DVU0978at 1073.731 kb on + strand, within DVU0978at 1073.734 kb on - strand, within DVU0978at 1073.747 kb on + strand, within DVU0978at 1073.844 kb on + strand, within DVU0978at 1074.005 kb on - strand, within DVU0978at 1074.046 kb on + strand, within DVU0978at 1074.052 kb on - strand, within DVU0978at 1074.063 kb on + strand, within DVU0978at 1074.082 kb on + strand, within DVU0978at 1074.192 kb on + strand, within DVU0978at 1074.192 kb on + strand, within DVU0978at 1074.192 kb on + strand, within DVU0978at 1074.240 kb on - strand, within DVU0978at 1074.355 kb on - strandat 1074.355 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Butyrate 10mM
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1,071,981 - DVU0976 0.26 -0.6
1,072,017 + DVU0976 0.29 +0.5
1,072,025 - DVU0976 0.30 +0.0
1,072,109 + DVU0976 0.37 -0.3
1,072,117 - DVU0976 0.38 +0.4
1,072,117 - DVU0976 0.38 -0.2
1,072,289 + DVU0976 0.53 -0.8
1,072,331 - DVU0976 0.56 -0.2
1,072,431 + DVU0976 0.65 +0.2
1,072,456 + DVU0976 0.67 -0.5
1,072,456 - DVU0976 0.67 +1.1
1,072,464 + DVU0976 0.68 -0.4
1,072,485 + DVU0976 0.70 -0.4
1,072,485 + DVU0976 0.70 +0.0
1,072,610 + DVU0976 0.80 -1.1
1,072,794 + -0.5
1,072,812 - +0.7
1,073,099 + DORF8571 0.33 -1.9
1,073,418 - -0.6
1,073,430 + -0.6
1,073,621 - -0.1
1,073,669 + DVU0978 0.15 -0.0
1,073,686 - DVU0978 0.17 +1.2
1,073,689 + DVU0978 0.17 -0.5
1,073,726 + DVU0978 0.22 +0.6
1,073,726 + DVU0978 0.22 +1.1
1,073,731 + DVU0978 0.22 -1.0
1,073,734 - DVU0978 0.22 +0.2
1,073,747 + DVU0978 0.24 -0.2
1,073,844 + DVU0978 0.35 +1.2
1,074,005 - DVU0978 0.54 -2.0
1,074,046 + DVU0978 0.59 -0.8
1,074,052 - DVU0978 0.60 -0.3
1,074,063 + DVU0978 0.61 +0.5
1,074,082 + DVU0978 0.63 -0.3
1,074,192 + DVU0978 0.76 -0.8
1,074,192 + DVU0978 0.76 -0.5
1,074,192 + DVU0978 0.76 -1.3
1,074,240 - DVU0978 0.82 -0.7
1,074,355 - +0.1
1,074,355 - -1.1

Or see this region's nucleotide sequence