Experiment: Glucose (C) and Betaine (N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01110 and PFLU_RS31375 are separated by 820 nucleotides PFLU_RS31375 and PFLU_RS01120 are separated by 500 nucleotides
PFLU_RS01110: PFLU_RS01110 - AAA family ATPase, at 244,488 to 245,112
_RS01110
PFLU_RS31375: PFLU_RS31375 - hypothetical protein, at 245,933 to 246,113
_RS31375
PFLU_RS01120: PFLU_RS01120 - amino acid ABC transporter permease, at 246,614 to 247,279
_RS01120
Position (kb) 245
246
247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 245.008 kb on + strand, within PFLU_RS01110 at 245.008 kb on + strand, within PFLU_RS01110 at 245.008 kb on + strand, within PFLU_RS01110 at 245.008 kb on + strand, within PFLU_RS01110 at 245.008 kb on + strand, within PFLU_RS01110 at 245.008 kb on + strand, within PFLU_RS01110 at 245.009 kb on - strand, within PFLU_RS01110 at 245.009 kb on - strand, within PFLU_RS01110 at 245.009 kb on - strand, within PFLU_RS01110 at 245.009 kb on - strand, within PFLU_RS01110 at 245.013 kb on + strand, within PFLU_RS01110 at 245.088 kb on - strand at 245.088 kb on - strand at 245.265 kb on + strand at 245.266 kb on - strand at 245.329 kb on + strand at 245.329 kb on + strand at 245.329 kb on + strand at 245.329 kb on + strand at 245.329 kb on + strand at 245.330 kb on - strand at 245.330 kb on - strand at 245.330 kb on - strand at 245.330 kb on - strand at 245.333 kb on + strand at 245.334 kb on - strand at 245.334 kb on - strand at 245.353 kb on + strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.367 kb on + strand at 245.367 kb on + strand at 245.367 kb on + strand at 245.407 kb on - strand at 245.432 kb on + strand at 245.447 kb on + strand at 245.480 kb on + strand at 245.481 kb on - strand at 245.526 kb on - strand at 245.536 kb on + strand at 245.537 kb on - strand at 245.538 kb on + strand at 245.542 kb on + strand at 245.593 kb on + strand at 245.593 kb on + strand at 245.593 kb on + strand at 245.618 kb on - strand at 245.623 kb on + strand at 245.623 kb on + strand at 245.623 kb on + strand at 245.624 kb on - strand at 245.624 kb on - strand at 245.624 kb on - strand at 245.624 kb on - strand at 245.624 kb on - strand at 245.624 kb on - strand at 245.624 kb on - strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.634 kb on + strand at 245.635 kb on - strand at 245.672 kb on + strand at 245.673 kb on - strand at 245.729 kb on - strand at 245.872 kb on - strand at 245.872 kb on - strand at 245.918 kb on - strand at 245.919 kb on + strand at 245.965 kb on - strand, within PFLU_RS31375 at 245.965 kb on - strand, within PFLU_RS31375 at 245.965 kb on - strand, within PFLU_RS31375 at 245.965 kb on - strand, within PFLU_RS31375 at 245.979 kb on + strand, within PFLU_RS31375 at 245.980 kb on - strand, within PFLU_RS31375 at 246.045 kb on + strand, within PFLU_RS31375 at 246.045 kb on + strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.048 kb on - strand, within PFLU_RS31375 at 246.097 kb on + strand at 246.097 kb on + strand at 246.097 kb on + strand at 246.098 kb on - strand at 246.098 kb on - strand at 246.111 kb on + strand at 246.111 kb on + strand at 246.111 kb on + strand at 246.112 kb on - strand at 246.112 kb on - strand at 246.112 kb on - strand at 246.112 kb on - strand at 246.112 kb on - strand at 246.112 kb on - strand at 246.145 kb on + strand at 246.145 kb on + strand at 246.145 kb on + strand at 246.145 kb on + strand at 246.145 kb on + strand at 246.146 kb on - strand at 246.146 kb on - strand at 246.146 kb on - strand at 246.146 kb on - strand at 246.146 kb on - strand at 246.173 kb on - strand at 246.173 kb on - strand at 246.173 kb on - strand at 246.173 kb on - strand at 246.173 kb on - strand at 246.173 kb on - strand at 246.234 kb on + strand at 246.234 kb on + strand at 246.235 kb on - strand at 246.235 kb on - strand at 246.235 kb on - strand at 246.268 kb on - strand at 246.325 kb on + strand at 246.331 kb on + strand at 246.331 kb on + strand at 246.331 kb on + strand at 246.331 kb on + strand at 246.331 kb on + strand at 246.332 kb on - strand at 246.332 kb on - strand at 246.332 kb on - strand at 246.332 kb on - strand at 246.332 kb on - strand at 246.421 kb on + strand at 246.421 kb on + strand at 246.421 kb on + strand at 246.421 kb on + strand at 246.421 kb on + strand at 246.421 kb on + strand at 246.422 kb on - strand at 246.422 kb on - strand at 246.422 kb on - strand at 246.422 kb on - strand at 246.422 kb on - strand at 246.422 kb on - strand at 246.422 kb on - strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.438 kb on + strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.439 kb on - strand at 246.473 kb on + strand at 246.494 kb on + strand at 246.499 kb on + strand at 246.503 kb on + strand at 246.512 kb on - strand at 246.588 kb on + strand at 246.588 kb on + strand at 246.634 kb on + strand at 246.660 kb on + strand at 246.660 kb on + strand at 246.661 kb on - strand at 246.761 kb on + strand, within PFLU_RS01120 at 246.762 kb on - strand, within PFLU_RS01120 at 246.762 kb on - strand, within PFLU_RS01120 at 246.762 kb on - strand, within PFLU_RS01120 at 246.785 kb on + strand, within PFLU_RS01120 at 246.785 kb on + strand, within PFLU_RS01120 at 246.785 kb on + strand, within PFLU_RS01120 at 246.785 kb on + strand, within PFLU_RS01120 at 246.785 kb on + strand, within PFLU_RS01120 at 246.785 kb on + strand, within PFLU_RS01120 at 246.785 kb on + strand, within PFLU_RS01120 at 246.785 kb on + strand, within PFLU_RS01120 at 246.785 kb on + strand, within PFLU_RS01120 at 246.785 kb on + strand, within PFLU_RS01120 at 246.785 kb on + strand, within PFLU_RS01120 at 246.786 kb on - strand, within PFLU_RS01120 at 246.786 kb on - strand, within PFLU_RS01120 at 246.786 kb on - strand, within PFLU_RS01120 at 246.786 kb on - strand, within PFLU_RS01120 at 246.786 kb on - strand, within PFLU_RS01120 at 246.786 kb on - strand, within PFLU_RS01120 at 246.786 kb on - strand, within PFLU_RS01120 at 246.786 kb on - strand, within PFLU_RS01120 at 246.786 kb on - strand, within PFLU_RS01120 at 246.786 kb on - strand, within PFLU_RS01120 at 246.837 kb on - strand, within PFLU_RS01120 at 246.837 kb on - strand, within PFLU_RS01120 at 246.866 kb on - strand, within PFLU_RS01120 at 246.866 kb on - strand, within PFLU_RS01120 at 246.866 kb on - strand, within PFLU_RS01120 at 246.917 kb on + strand, within PFLU_RS01120 at 246.918 kb on - strand, within PFLU_RS01120 at 246.918 kb on - strand, within PFLU_RS01120 at 246.918 kb on - strand, within PFLU_RS01120 at 246.918 kb on - strand, within PFLU_RS01120 at 246.918 kb on - strand, within PFLU_RS01120
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose (C) and Betaine (N); with TAPS remove 245,008 + PFLU_RS01110 0.83 -0.0 245,008 + PFLU_RS01110 0.83 +0.8 245,008 + PFLU_RS01110 0.83 -0.1 245,008 + PFLU_RS01110 0.83 +0.5 245,008 + PFLU_RS01110 0.83 +0.5 245,008 + PFLU_RS01110 0.83 -0.3 245,009 - PFLU_RS01110 0.83 +0.3 245,009 - PFLU_RS01110 0.83 +0.5 245,009 - PFLU_RS01110 0.83 -0.9 245,009 - PFLU_RS01110 0.83 -1.1 245,013 + PFLU_RS01110 0.84 +0.1 245,088 - +1.6 245,088 - +0.2 245,265 + -0.1 245,266 - -0.0 245,329 + -0.8 245,329 + +0.9 245,329 + -0.3 245,329 + -1.0 245,329 + -0.1 245,330 - +1.6 245,330 - -0.4 245,330 - +1.0 245,330 - -1.2 245,333 + +0.6 245,334 - -0.8 245,334 - +1.5 245,353 + +0.6 245,361 - +0.0 245,361 - +0.7 245,367 + +0.8 245,367 + -1.8 245,367 + +0.5 245,407 - +0.7 245,432 + +0.6 245,447 + -0.1 245,480 + +0.3 245,481 - -0.4 245,526 - -0.3 245,536 + -2.0 245,537 - +1.5 245,538 + +1.0 245,542 + -0.5 245,593 + +0.7 245,593 + +0.9 245,593 + +0.7 245,618 - -2.9 245,623 + +1.5 245,623 + -0.5 245,623 + +0.4 245,624 - +1.0 245,624 - -1.2 245,624 - -0.8 245,624 - -0.3 245,624 - -1.9 245,624 - -1.9 245,624 - -0.8 245,626 + -0.3 245,626 + -0.3 245,626 + -0.5 245,626 + +0.2 245,626 + -1.2 245,626 + -1.9 245,626 + +0.5 245,626 + -0.3 245,626 + +0.3 245,626 + -0.1 245,626 + -0.4 245,626 + -0.5 245,626 + -1.0 245,627 - +1.3 245,627 - -1.5 245,627 - +0.8 245,627 - -0.2 245,627 - +1.0 245,627 - -0.5 245,627 - -0.3 245,627 - -0.2 245,627 - +0.9 245,627 - -0.5 245,627 - -0.4 245,627 - -2.0 245,634 + +1.2 245,635 - +0.1 245,672 + -1.5 245,673 - -0.1 245,729 - +0.3 245,872 - +0.5 245,872 - +0.5 245,918 - -0.3 245,919 + -0.1 245,965 - PFLU_RS31375 0.18 -1.7 245,965 - PFLU_RS31375 0.18 +2.0 245,965 - PFLU_RS31375 0.18 +0.2 245,965 - PFLU_RS31375 0.18 +0.2 245,979 + PFLU_RS31375 0.25 +0.5 245,980 - PFLU_RS31375 0.26 -1.3 246,045 + PFLU_RS31375 0.62 -1.6 246,045 + PFLU_RS31375 0.62 +0.5 246,046 - PFLU_RS31375 0.62 +0.9 246,046 - PFLU_RS31375 0.62 -0.4 246,046 - PFLU_RS31375 0.62 -0.9 246,046 - PFLU_RS31375 0.62 +0.4 246,046 - PFLU_RS31375 0.62 +0.9 246,046 - PFLU_RS31375 0.62 -2.2 246,046 - PFLU_RS31375 0.62 -0.5 246,048 - PFLU_RS31375 0.64 +0.2 246,097 + -1.1 246,097 + -0.8 246,097 + +0.5 246,098 - -0.5 246,098 - -0.3 246,111 + +0.0 246,111 + -0.0 246,111 + +0.5 246,112 - -1.1 246,112 - +1.0 246,112 - -0.1 246,112 - +0.4 246,112 - +0.8 246,112 - -0.9 246,145 + -0.3 246,145 + -0.7 246,145 + +0.8 246,145 + +0.3 246,145 + -0.8 246,146 - +0.6 246,146 - +0.0 246,146 - +1.2 246,146 - +2.0 246,146 - +0.6 246,173 - -0.4 246,173 - +1.8 246,173 - -1.4 246,173 - +0.1 246,173 - -0.1 246,173 - +0.9 246,234 + -0.0 246,234 + +0.0 246,235 - +2.0 246,235 - +0.1 246,235 - +1.0 246,268 - +0.8 246,325 + +2.0 246,331 + +0.6 246,331 + -0.4 246,331 + -0.3 246,331 + -1.0 246,331 + -0.3 246,332 - +0.3 246,332 - -0.4 246,332 - +2.0 246,332 - +0.1 246,332 - +0.4 246,421 + +0.1 246,421 + -1.1 246,421 + +1.2 246,421 + -1.7 246,421 + +0.6 246,421 + -2.0 246,422 - +1.6 246,422 - +0.3 246,422 - -0.9 246,422 - -0.5 246,422 - +0.1 246,422 - +1.0 246,422 - +0.2 246,438 + +0.5 246,438 + +1.0 246,438 + -0.0 246,438 + +0.0 246,438 + -0.9 246,438 + +0.7 246,438 + +1.0 246,438 + +0.4 246,438 + +1.2 246,438 + -1.5 246,438 + -0.5 246,438 + -2.2 246,438 + -0.9 246,438 + -0.1 246,438 + +0.3 246,438 + +0.3 246,438 + -1.4 246,439 - +0.2 246,439 - +1.2 246,439 - +0.0 246,439 - +0.4 246,439 - -1.8 246,439 - +0.8 246,439 - +1.6 246,439 - -1.1 246,439 - +1.2 246,439 - +0.3 246,439 - +1.0 246,439 - -1.0 246,439 - -0.0 246,439 - -0.7 246,439 - -0.5 246,439 - -1.1 246,473 + -2.3 246,494 + -0.0 246,499 + -1.1 246,503 + -0.1 246,512 - +1.6 246,588 + +0.6 246,588 + +1.8 246,634 + +0.8 246,660 + -0.3 246,660 + -1.0 246,661 - +1.2 246,761 + PFLU_RS01120 0.22 +0.4 246,762 - PFLU_RS01120 0.22 +0.9 246,762 - PFLU_RS01120 0.22 -1.1 246,762 - PFLU_RS01120 0.22 +0.4 246,785 + PFLU_RS01120 0.26 +0.5 246,785 + PFLU_RS01120 0.26 -0.0 246,785 + PFLU_RS01120 0.26 -0.2 246,785 + PFLU_RS01120 0.26 +0.2 246,785 + PFLU_RS01120 0.26 +0.2 246,785 + PFLU_RS01120 0.26 +0.2 246,785 + PFLU_RS01120 0.26 +2.0 246,785 + PFLU_RS01120 0.26 -1.4 246,785 + PFLU_RS01120 0.26 -0.7 246,785 + PFLU_RS01120 0.26 -1.9 246,785 + PFLU_RS01120 0.26 +0.7 246,786 - PFLU_RS01120 0.26 -0.3 246,786 - PFLU_RS01120 0.26 +0.9 246,786 - PFLU_RS01120 0.26 +0.4 246,786 - PFLU_RS01120 0.26 +1.5 246,786 - PFLU_RS01120 0.26 -0.8 246,786 - PFLU_RS01120 0.26 +0.8 246,786 - PFLU_RS01120 0.26 +0.0 246,786 - PFLU_RS01120 0.26 -0.2 246,786 - PFLU_RS01120 0.26 +0.9 246,786 - PFLU_RS01120 0.26 -1.3 246,837 - PFLU_RS01120 0.33 +0.2 246,837 - PFLU_RS01120 0.33 -1.3 246,866 - PFLU_RS01120 0.38 -2.6 246,866 - PFLU_RS01120 0.38 -0.4 246,866 - PFLU_RS01120 0.38 +0.5 246,917 + PFLU_RS01120 0.45 +0.7 246,918 - PFLU_RS01120 0.46 +0.4 246,918 - PFLU_RS01120 0.46 -0.2 246,918 - PFLU_RS01120 0.46 -1.3 246,918 - PFLU_RS01120 0.46 +0.0 246,918 - PFLU_RS01120 0.46 +1.0
Or see this region's nucleotide sequence