Experiment: Glucose (C) and Betaine (N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18365 and PFLU_RS18370 overlap by 4 nucleotides PFLU_RS18370 and PFLU_RS18375 overlap by 1 nucleotides PFLU_RS18375 and PFLU_RS18380 overlap by 4 nucleotides PFLU_RS18380 and PFLU_RS18385 are separated by 24 nucleotides
PFLU_RS18365: PFLU_RS18365 - UDP-N-acetylmuramate dehydrogenase, at 4,164,606 to 4,165,625
_RS18365
PFLU_RS18370: PFLU_RS18370 - low molecular weight phosphotyrosine protein phosphatase, at 4,165,622 to 4,166,086
_RS18370
PFLU_RS18375: PFLU_RS18375 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 4,166,086 to 4,166,850
_RS18375
PFLU_RS18380: PFLU_RS18380 - Trm112 family protein, at 4,166,847 to 4,167,032
_RS18380
PFLU_RS18385: PFLU_RS18385 - tetraacyldisaccharide 4'-kinase, at 4,167,057 to 4,168,067
_RS18385
Position (kb) 4165
4166
4167 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4165.652 kb on + strand at 4165.653 kb on - strand at 4165.653 kb on - strand at 4165.710 kb on + strand, within PFLU_RS18370 at 4165.710 kb on + strand, within PFLU_RS18370 at 4165.710 kb on + strand, within PFLU_RS18370 at 4165.710 kb on + strand, within PFLU_RS18370 at 4165.711 kb on - strand, within PFLU_RS18370 at 4165.711 kb on - strand, within PFLU_RS18370 at 4165.713 kb on + strand, within PFLU_RS18370 at 4165.714 kb on - strand, within PFLU_RS18370 at 4165.803 kb on - strand, within PFLU_RS18370 at 4165.803 kb on - strand, within PFLU_RS18370 at 4165.803 kb on - strand, within PFLU_RS18370 at 4165.845 kb on + strand, within PFLU_RS18370 at 4165.845 kb on + strand, within PFLU_RS18370 at 4165.899 kb on + strand, within PFLU_RS18370 at 4165.979 kb on + strand, within PFLU_RS18370 at 4165.980 kb on - strand, within PFLU_RS18370 at 4165.980 kb on - strand, within PFLU_RS18370 at 4165.980 kb on - strand, within PFLU_RS18370 at 4166.018 kb on - strand, within PFLU_RS18370 at 4166.018 kb on - strand, within PFLU_RS18370 at 4166.027 kb on + strand, within PFLU_RS18370 at 4166.027 kb on + strand, within PFLU_RS18370 at 4166.027 kb on + strand, within PFLU_RS18370 at 4166.028 kb on - strand, within PFLU_RS18370 at 4166.028 kb on - strand, within PFLU_RS18370 at 4166.056 kb on + strand at 4166.056 kb on + strand at 4166.057 kb on - strand at 4166.057 kb on - strand at 4167.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose (C) and Betaine (N); with TAPS remove 4,165,652 + +2.4 4,165,653 - +0.3 4,165,653 - +0.7 4,165,710 + PFLU_RS18370 0.19 -0.6 4,165,710 + PFLU_RS18370 0.19 -1.4 4,165,710 + PFLU_RS18370 0.19 -1.4 4,165,710 + PFLU_RS18370 0.19 -0.2 4,165,711 - PFLU_RS18370 0.19 -1.2 4,165,711 - PFLU_RS18370 0.19 +0.3 4,165,713 + PFLU_RS18370 0.20 -2.7 4,165,714 - PFLU_RS18370 0.20 -0.1 4,165,803 - PFLU_RS18370 0.39 +1.0 4,165,803 - PFLU_RS18370 0.39 -1.1 4,165,803 - PFLU_RS18370 0.39 -1.1 4,165,845 + PFLU_RS18370 0.48 -1.2 4,165,845 + PFLU_RS18370 0.48 +1.1 4,165,899 + PFLU_RS18370 0.60 -0.6 4,165,979 + PFLU_RS18370 0.77 -1.6 4,165,980 - PFLU_RS18370 0.77 -2.1 4,165,980 - PFLU_RS18370 0.77 -0.7 4,165,980 - PFLU_RS18370 0.77 +1.8 4,166,018 - PFLU_RS18370 0.85 +0.7 4,166,018 - PFLU_RS18370 0.85 +0.8 4,166,027 + PFLU_RS18370 0.87 -0.6 4,166,027 + PFLU_RS18370 0.87 +1.4 4,166,027 + PFLU_RS18370 0.87 +0.3 4,166,028 - PFLU_RS18370 0.87 +2.8 4,166,028 - PFLU_RS18370 0.87 -0.1 4,166,056 + -2.2 4,166,056 + -0.9 4,166,057 - +0.8 4,166,057 - +1.4 4,167,058 + +0.4
Or see this region's nucleotide sequence