Experiment: MoLS4 with Butyrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0197 and DVU0198 overlap by 17 nucleotides DVU0198 and DVU0199 are separated by 9 nucleotides DVU0199 and DVU0200 are separated by 11 nucleotides
DVU0197: DVU0197 - phage portal protein, lambda family (TIGR), at 242,590 to 244,290
DVU0197
DVU0198: DVU0198 - minor capsid protein C, degenerate (TIGR), at 244,274 to 245,593
DVU0198
DVU0199: DVU0199 - conserved hypothetical protein (TIGR), at 245,603 to 245,986
DVU0199
DVU0200: DVU0200 - major head protein (TIGR), at 245,998 to 247,002
DVU0200
Position (kb) 244
245
246 Strain fitness (log2 ratio) -1
0
1 at 243.396 kb on + strand, within DVU0197 at 243.399 kb on - strand, within DVU0197 at 243.399 kb on - strand, within DVU0197 at 243.407 kb on + strand, within DVU0197 at 243.931 kb on - strand, within DVU0197 at 243.962 kb on - strand, within DVU0197 at 244.162 kb on + strand at 244.225 kb on - strand at 244.264 kb on - strand at 244.349 kb on + strand at 244.349 kb on + strand at 244.485 kb on - strand, within DVU0198 at 244.568 kb on + strand, within DVU0198 at 244.885 kb on + strand, within DVU0198 at 245.056 kb on + strand, within DVU0198 at 245.056 kb on + strand, within DVU0198 at 245.086 kb on - strand, within DVU0198 at 246.527 kb on - strand, within DVU0200
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Butyrate 10mM remove 243,396 + DVU0197 0.47 +0.3 243,399 - DVU0197 0.48 +0.4 243,399 - DVU0197 0.48 +1.7 243,407 + DVU0197 0.48 -0.1 243,931 - DVU0197 0.79 -0.1 243,962 - DVU0197 0.81 +0.0 244,162 + +0.4 244,225 - +0.4 244,264 - -0.3 244,349 + +1.5 244,349 + +1.3 244,485 - DVU0198 0.16 +0.9 244,568 + DVU0198 0.22 -0.0 244,885 + DVU0198 0.46 -0.2 245,056 + DVU0198 0.59 +0.6 245,056 + DVU0198 0.59 -0.3 245,086 - DVU0198 0.62 +0.6 246,527 - DVU0200 0.53 +0.3
Or see this region's nucleotide sequence