Experiment: MoLS4 with Butyrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2451 and DVU2454 are separated by 703 nucleotides DVU2454 and DVU2455 are separated by 156 nucleotides
DVU2451: DVU2451 - L-lactate permease family protein (TIGR), at 2,555,055 to 2,556,767
DVU2451
DVU2454: DVU2454 - hypothetical protein (TIGR), at 2,557,471 to 2,557,740
DVU2454
DVU2455: DVU2455 - NAD-dependent epimerase/dehydratase family protein (TIGR), at 2,557,897 to 2,558,847
DVU2455
Position (kb)
2557
2558 Strain fitness (log2 ratio)
-1
0
1 at 2556.489 kb on + strand, within DVU2451 at 2556.489 kb on + strand, within DVU2451 at 2556.499 kb on - strand, within DVU2451 at 2556.507 kb on - strand, within DVU2451 at 2556.533 kb on - strand, within DVU2451 at 2556.796 kb on - strand at 2556.807 kb on + strand at 2556.847 kb on - strand at 2557.274 kb on - strand at 2557.308 kb on + strand at 2557.353 kb on + strand at 2557.361 kb on - strand at 2557.361 kb on - strand at 2557.371 kb on - strand at 2557.539 kb on - strand, within DVU2454 at 2557.714 kb on + strand at 2557.791 kb on + strand at 2557.791 kb on + strand at 2557.794 kb on - strand at 2557.867 kb on - strand at 2557.875 kb on + strand at 2557.954 kb on - strand at 2557.954 kb on - strand at 2557.954 kb on - strand at 2558.029 kb on + strand, within DVU2455 at 2558.054 kb on + strand, within DVU2455 at 2558.362 kb on - strand, within DVU2455 at 2558.524 kb on + strand, within DVU2455 at 2558.532 kb on - strand, within DVU2455 at 2558.609 kb on - strand, within DVU2455
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Butyrate 10mM remove 2,556,489 + DVU2451 0.84 +0.0 2,556,489 + DVU2451 0.84 +0.2 2,556,499 - DVU2451 0.84 -0.1 2,556,507 - DVU2451 0.85 -0.6 2,556,533 - DVU2451 0.86 +0.4 2,556,796 - +0.0 2,556,807 + -0.8 2,556,847 - -0.5 2,557,274 - -0.1 2,557,308 + +0.2 2,557,353 + -0.5 2,557,361 - -1.3 2,557,361 - -0.0 2,557,371 - +0.6 2,557,539 - DVU2454 0.25 -1.0 2,557,714 + -0.6 2,557,791 + +0.3 2,557,791 + +0.1 2,557,794 - -0.2 2,557,867 - -0.5 2,557,875 + +0.0 2,557,954 - +0.2 2,557,954 - +0.1 2,557,954 - -0.3 2,558,029 + DVU2455 0.14 -0.2 2,558,054 + DVU2455 0.17 +0.6 2,558,362 - DVU2455 0.49 +0.1 2,558,524 + DVU2455 0.66 +0.4 2,558,532 - DVU2455 0.67 -0.3 2,558,609 - DVU2455 0.75 -0.8
Or see this region's nucleotide sequence