Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5396

Experiment: 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5395 and Pf6N2E2_5396 are separated by 128 nucleotidesPf6N2E2_5396 and Pf6N2E2_5397 are separated by 89 nucleotides Pf6N2E2_5395 - Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein, at 6,200,942 to 6,201,676 _5395 Pf6N2E2_5396 - YheO-like PAS domain, at 6,201,805 to 6,202,431 _5396 Pf6N2E2_5397 - Sarcosine oxidase beta subunit (EC 1.5.3.1), at 6,202,521 to 6,203,477 _5397 Position (kb) 6201 6202 6203Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6200.832 kb on + strandat 6201.053 kb on + strand, within Pf6N2E2_5395at 6201.053 kb on + strand, within Pf6N2E2_5395at 6201.054 kb on - strand, within Pf6N2E2_5395at 6201.054 kb on - strand, within Pf6N2E2_5395at 6201.221 kb on + strand, within Pf6N2E2_5395at 6201.221 kb on + strand, within Pf6N2E2_5395at 6201.221 kb on + strand, within Pf6N2E2_5395at 6201.222 kb on - strand, within Pf6N2E2_5395at 6201.222 kb on - strand, within Pf6N2E2_5395at 6201.222 kb on - strand, within Pf6N2E2_5395at 6201.224 kb on + strand, within Pf6N2E2_5395at 6201.224 kb on + strand, within Pf6N2E2_5395at 6201.225 kb on - strand, within Pf6N2E2_5395at 6201.225 kb on - strand, within Pf6N2E2_5395at 6201.225 kb on - strand, within Pf6N2E2_5395at 6201.225 kb on - strand, within Pf6N2E2_5395at 6201.278 kb on + strand, within Pf6N2E2_5395at 6201.278 kb on + strand, within Pf6N2E2_5395at 6201.279 kb on - strand, within Pf6N2E2_5395at 6201.279 kb on - strand, within Pf6N2E2_5395at 6201.279 kb on - strand, within Pf6N2E2_5395at 6201.380 kb on + strand, within Pf6N2E2_5395at 6201.380 kb on + strand, within Pf6N2E2_5395at 6201.381 kb on - strand, within Pf6N2E2_5395at 6201.382 kb on + strand, within Pf6N2E2_5395at 6201.382 kb on + strand, within Pf6N2E2_5395at 6201.382 kb on + strand, within Pf6N2E2_5395at 6201.382 kb on + strand, within Pf6N2E2_5395at 6201.382 kb on + strand, within Pf6N2E2_5395at 6201.382 kb on + strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.383 kb on - strand, within Pf6N2E2_5395at 6201.401 kb on + strand, within Pf6N2E2_5395at 6201.401 kb on + strand, within Pf6N2E2_5395at 6201.401 kb on + strand, within Pf6N2E2_5395at 6201.401 kb on + strand, within Pf6N2E2_5395at 6201.401 kb on + strand, within Pf6N2E2_5395at 6201.401 kb on + strand, within Pf6N2E2_5395at 6201.491 kb on + strand, within Pf6N2E2_5395at 6201.527 kb on + strand, within Pf6N2E2_5395at 6201.528 kb on - strand, within Pf6N2E2_5395at 6201.626 kb on + strandat 6201.626 kb on + strandat 6201.626 kb on + strandat 6201.626 kb on + strandat 6201.647 kb on + strandat 6201.647 kb on + strandat 6201.647 kb on + strandat 6201.647 kb on + strandat 6201.665 kb on + strandat 6201.665 kb on + strandat 6201.666 kb on - strandat 6201.677 kb on + strandat 6201.677 kb on + strandat 6201.678 kb on - strandat 6201.678 kb on - strandat 6201.728 kb on + strandat 6201.728 kb on + strandat 6201.728 kb on + strandat 6201.728 kb on + strandat 6201.728 kb on + strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.729 kb on - strandat 6201.746 kb on + strandat 6201.747 kb on - strandat 6201.833 kb on + strandat 6201.833 kb on + strandat 6201.833 kb on + strandat 6201.834 kb on - strandat 6201.834 kb on - strandat 6201.852 kb on + strandat 6201.872 kb on + strand, within Pf6N2E2_5396at 6201.872 kb on + strand, within Pf6N2E2_5396at 6201.872 kb on + strand, within Pf6N2E2_5396at 6201.872 kb on + strand, within Pf6N2E2_5396at 6201.872 kb on + strand, within Pf6N2E2_5396at 6201.872 kb on + strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6201.873 kb on - strand, within Pf6N2E2_5396at 6202.110 kb on + strand, within Pf6N2E2_5396at 6202.111 kb on - strand, within Pf6N2E2_5396at 6202.162 kb on + strand, within Pf6N2E2_5396at 6202.163 kb on - strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.224 kb on + strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.225 kb on - strand, within Pf6N2E2_5396at 6202.297 kb on - strand, within Pf6N2E2_5396at 6202.307 kb on + strand, within Pf6N2E2_5396at 6202.307 kb on + strand, within Pf6N2E2_5396at 6202.308 kb on - strand, within Pf6N2E2_5396at 6202.308 kb on - strand, within Pf6N2E2_5396at 6202.308 kb on - strand, within Pf6N2E2_5396at 6202.308 kb on - strand, within Pf6N2E2_5396at 6202.358 kb on + strand, within Pf6N2E2_5396at 6202.358 kb on + strand, within Pf6N2E2_5396at 6202.722 kb on + strand, within Pf6N2E2_5397at 6202.723 kb on - strand, within Pf6N2E2_5397at 6202.795 kb on + strand, within Pf6N2E2_5397at 6202.796 kb on - strand, within Pf6N2E2_5397at 6202.796 kb on - strand, within Pf6N2E2_5397at 6202.796 kb on - strand, within Pf6N2E2_5397at 6202.796 kb on - strand, within Pf6N2E2_5397at 6202.830 kb on + strand, within Pf6N2E2_5397at 6202.830 kb on + strand, within Pf6N2E2_5397at 6202.830 kb on + strand, within Pf6N2E2_5397at 6202.831 kb on - strand, within Pf6N2E2_5397at 6202.831 kb on - strand, within Pf6N2E2_5397at 6202.831 kb on - strand, within Pf6N2E2_5397at 6202.831 kb on - strand, within Pf6N2E2_5397at 6202.898 kb on + strand, within Pf6N2E2_5397at 6202.898 kb on + strand, within Pf6N2E2_5397at 6202.898 kb on + strand, within Pf6N2E2_5397at 6202.899 kb on - strand, within Pf6N2E2_5397at 6202.899 kb on - strand, within Pf6N2E2_5397at 6202.899 kb on - strand, within Pf6N2E2_5397at 6202.899 kb on - strand, within Pf6N2E2_5397at 6202.899 kb on - strand, within Pf6N2E2_5397at 6202.899 kb on - strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.900 kb on + strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6202.901 kb on - strand, within Pf6N2E2_5397at 6203.178 kb on - strand, within Pf6N2E2_5397at 6203.178 kb on - strand, within Pf6N2E2_5397at 6203.188 kb on + strand, within Pf6N2E2_5397at 6203.188 kb on + strand, within Pf6N2E2_5397at 6203.189 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.237 kb on - strand, within Pf6N2E2_5397at 6203.342 kb on - strand, within Pf6N2E2_5397

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Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
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6,200,832 + -0.1
6,201,053 + Pf6N2E2_5395 0.15 -0.8
6,201,053 + Pf6N2E2_5395 0.15 -0.4
6,201,054 - Pf6N2E2_5395 0.15 +0.2
6,201,054 - Pf6N2E2_5395 0.15 +1.2
6,201,221 + Pf6N2E2_5395 0.38 -0.8
6,201,221 + Pf6N2E2_5395 0.38 -2.6
6,201,221 + Pf6N2E2_5395 0.38 +1.5
6,201,222 - Pf6N2E2_5395 0.38 +0.8
6,201,222 - Pf6N2E2_5395 0.38 +0.2
6,201,222 - Pf6N2E2_5395 0.38 -0.6
6,201,224 + Pf6N2E2_5395 0.38 -0.8
6,201,224 + Pf6N2E2_5395 0.38 +0.0
6,201,225 - Pf6N2E2_5395 0.39 +0.6
6,201,225 - Pf6N2E2_5395 0.39 +0.8
6,201,225 - Pf6N2E2_5395 0.39 +0.2
6,201,225 - Pf6N2E2_5395 0.39 +0.2
6,201,278 + Pf6N2E2_5395 0.46 +0.6
6,201,278 + Pf6N2E2_5395 0.46 -0.5
6,201,279 - Pf6N2E2_5395 0.46 -0.8
6,201,279 - Pf6N2E2_5395 0.46 +0.3
6,201,279 - Pf6N2E2_5395 0.46 +0.2
6,201,380 + Pf6N2E2_5395 0.60 +1.2
6,201,380 + Pf6N2E2_5395 0.60 +0.3
6,201,381 - Pf6N2E2_5395 0.60 -0.5
6,201,382 + Pf6N2E2_5395 0.60 +0.2
6,201,382 + Pf6N2E2_5395 0.60 +0.1
6,201,382 + Pf6N2E2_5395 0.60 +1.0
6,201,382 + Pf6N2E2_5395 0.60 +0.4
6,201,382 + Pf6N2E2_5395 0.60 -0.4
6,201,382 + Pf6N2E2_5395 0.60 -0.1
6,201,383 - Pf6N2E2_5395 0.60 +1.2
6,201,383 - Pf6N2E2_5395 0.60 -0.1
6,201,383 - Pf6N2E2_5395 0.60 +0.4
6,201,383 - Pf6N2E2_5395 0.60 -0.8
6,201,383 - Pf6N2E2_5395 0.60 +0.2
6,201,383 - Pf6N2E2_5395 0.60 +0.2
6,201,383 - Pf6N2E2_5395 0.60 -0.3
6,201,383 - Pf6N2E2_5395 0.60 -0.8
6,201,383 - Pf6N2E2_5395 0.60 +0.2
6,201,401 + Pf6N2E2_5395 0.62 +0.4
6,201,401 + Pf6N2E2_5395 0.62 -0.8
6,201,401 + Pf6N2E2_5395 0.62 -0.3
6,201,401 + Pf6N2E2_5395 0.62 -0.4
6,201,401 + Pf6N2E2_5395 0.62 +0.6
6,201,401 + Pf6N2E2_5395 0.62 +0.2
6,201,491 + Pf6N2E2_5395 0.75 +0.4
6,201,527 + Pf6N2E2_5395 0.80 -0.0
6,201,528 - Pf6N2E2_5395 0.80 +1.7
6,201,626 + +0.9
6,201,626 + -1.1
6,201,626 + -0.1
6,201,626 + -1.6
6,201,647 + -0.3
6,201,647 + -0.1
6,201,647 + +0.5
6,201,647 + -0.8
6,201,665 + +1.5
6,201,665 + +0.5
6,201,666 - +1.4
6,201,677 + +0.5
6,201,677 + +0.0
6,201,678 - +0.5
6,201,678 - -0.4
6,201,728 + -0.4
6,201,728 + +1.2
6,201,728 + +1.0
6,201,728 + -0.1
6,201,728 + +0.2
6,201,729 - -0.5
6,201,729 - +0.7
6,201,729 - +0.3
6,201,729 - -0.6
6,201,729 - +1.4
6,201,729 - +0.1
6,201,729 - +0.8
6,201,729 - +0.5
6,201,729 - +0.2
6,201,729 - +0.7
6,201,746 + +0.6
6,201,747 - +1.3
6,201,833 + +1.5
6,201,833 + +0.2
6,201,833 + +1.2
6,201,834 - +1.6
6,201,834 - +0.2
6,201,852 + +1.2
6,201,872 + Pf6N2E2_5396 0.11 +0.2
6,201,872 + Pf6N2E2_5396 0.11 +1.3
6,201,872 + Pf6N2E2_5396 0.11 +0.0
6,201,872 + Pf6N2E2_5396 0.11 -0.4
6,201,872 + Pf6N2E2_5396 0.11 +1.5
6,201,872 + Pf6N2E2_5396 0.11 +0.6
6,201,873 - Pf6N2E2_5396 0.11 -0.3
6,201,873 - Pf6N2E2_5396 0.11 +0.8
6,201,873 - Pf6N2E2_5396 0.11 +0.6
6,201,873 - Pf6N2E2_5396 0.11 +0.2
6,201,873 - Pf6N2E2_5396 0.11 +1.0
6,201,873 - Pf6N2E2_5396 0.11 +1.7
6,201,873 - Pf6N2E2_5396 0.11 +0.9
6,201,873 - Pf6N2E2_5396 0.11 +0.7
6,201,873 - Pf6N2E2_5396 0.11 +2.2
6,201,873 - Pf6N2E2_5396 0.11 +1.1
6,201,873 - Pf6N2E2_5396 0.11 +1.2
6,201,873 - Pf6N2E2_5396 0.11 +1.6
6,202,110 + Pf6N2E2_5396 0.49 +1.5
6,202,111 - Pf6N2E2_5396 0.49 +0.3
6,202,162 + Pf6N2E2_5396 0.57 +0.2
6,202,163 - Pf6N2E2_5396 0.57 +0.2
6,202,224 + Pf6N2E2_5396 0.67 +0.2
6,202,224 + Pf6N2E2_5396 0.67 -0.4
6,202,224 + Pf6N2E2_5396 0.67 +0.6
6,202,224 + Pf6N2E2_5396 0.67 +1.2
6,202,224 + Pf6N2E2_5396 0.67 +1.2
6,202,224 + Pf6N2E2_5396 0.67 +0.7
6,202,224 + Pf6N2E2_5396 0.67 +0.7
6,202,224 + Pf6N2E2_5396 0.67 +1.4
6,202,224 + Pf6N2E2_5396 0.67 +2.5
6,202,225 - Pf6N2E2_5396 0.67 +1.0
6,202,225 - Pf6N2E2_5396 0.67 +1.5
6,202,225 - Pf6N2E2_5396 0.67 +0.5
6,202,225 - Pf6N2E2_5396 0.67 +2.8
6,202,225 - Pf6N2E2_5396 0.67 +1.2
6,202,225 - Pf6N2E2_5396 0.67 +1.4
6,202,225 - Pf6N2E2_5396 0.67 +1.2
6,202,297 - Pf6N2E2_5396 0.78 +0.2
6,202,307 + Pf6N2E2_5396 0.80 +1.1
6,202,307 + Pf6N2E2_5396 0.80 +0.2
6,202,308 - Pf6N2E2_5396 0.80 +1.6
6,202,308 - Pf6N2E2_5396 0.80 +1.4
6,202,308 - Pf6N2E2_5396 0.80 +0.6
6,202,308 - Pf6N2E2_5396 0.80 +0.2
6,202,358 + Pf6N2E2_5396 0.88 +1.3
6,202,358 + Pf6N2E2_5396 0.88 +0.2
6,202,722 + Pf6N2E2_5397 0.21 -0.8
6,202,723 - Pf6N2E2_5397 0.21 -1.2
6,202,795 + Pf6N2E2_5397 0.29 -1.8
6,202,796 - Pf6N2E2_5397 0.29 +0.2
6,202,796 - Pf6N2E2_5397 0.29 -1.1
6,202,796 - Pf6N2E2_5397 0.29 +0.2
6,202,796 - Pf6N2E2_5397 0.29 +0.7
6,202,830 + Pf6N2E2_5397 0.32 -0.2
6,202,830 + Pf6N2E2_5397 0.32 -0.8
6,202,830 + Pf6N2E2_5397 0.32 +1.2
6,202,831 - Pf6N2E2_5397 0.32 +0.9
6,202,831 - Pf6N2E2_5397 0.32 -0.6
6,202,831 - Pf6N2E2_5397 0.32 +0.7
6,202,831 - Pf6N2E2_5397 0.32 -0.3
6,202,898 + Pf6N2E2_5397 0.39 -0.6
6,202,898 + Pf6N2E2_5397 0.39 +0.7
6,202,898 + Pf6N2E2_5397 0.39 +0.0
6,202,899 - Pf6N2E2_5397 0.39 -0.7
6,202,899 - Pf6N2E2_5397 0.39 -0.3
6,202,899 - Pf6N2E2_5397 0.39 +1.4
6,202,899 - Pf6N2E2_5397 0.39 +0.9
6,202,899 - Pf6N2E2_5397 0.39 -1.4
6,202,899 - Pf6N2E2_5397 0.39 +0.7
6,202,900 + Pf6N2E2_5397 0.40 +0.2
6,202,900 + Pf6N2E2_5397 0.40 -0.8
6,202,900 + Pf6N2E2_5397 0.40 -1.4
6,202,900 + Pf6N2E2_5397 0.40 +0.2
6,202,900 + Pf6N2E2_5397 0.40 +1.0
6,202,900 + Pf6N2E2_5397 0.40 -0.3
6,202,900 + Pf6N2E2_5397 0.40 -0.8
6,202,900 + Pf6N2E2_5397 0.40 +0.4
6,202,900 + Pf6N2E2_5397 0.40 +0.2
6,202,900 + Pf6N2E2_5397 0.40 -0.4
6,202,901 - Pf6N2E2_5397 0.40 -0.3
6,202,901 - Pf6N2E2_5397 0.40 +0.5
6,202,901 - Pf6N2E2_5397 0.40 +1.2
6,202,901 - Pf6N2E2_5397 0.40 -0.3
6,202,901 - Pf6N2E2_5397 0.40 -0.2
6,202,901 - Pf6N2E2_5397 0.40 +0.7
6,202,901 - Pf6N2E2_5397 0.40 +0.2
6,202,901 - Pf6N2E2_5397 0.40 +0.9
6,202,901 - Pf6N2E2_5397 0.40 -0.4
6,203,178 - Pf6N2E2_5397 0.69 +1.3
6,203,178 - Pf6N2E2_5397 0.69 +0.5
6,203,188 + Pf6N2E2_5397 0.70 +0.2
6,203,188 + Pf6N2E2_5397 0.70 +0.4
6,203,189 - Pf6N2E2_5397 0.70 -0.8
6,203,237 - Pf6N2E2_5397 0.75 +1.4
6,203,237 - Pf6N2E2_5397 0.75 +1.0
6,203,237 - Pf6N2E2_5397 0.75 +0.6
6,203,237 - Pf6N2E2_5397 0.75 +0.2
6,203,237 - Pf6N2E2_5397 0.75 +0.1
6,203,237 - Pf6N2E2_5397 0.75 +0.2
6,203,237 - Pf6N2E2_5397 0.75 -2.0
6,203,342 - Pf6N2E2_5397 0.86 +1.2

Or see this region's nucleotide sequence