Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23770 and BWI76_RS23775 are separated by 215 nucleotides BWI76_RS23775 and BWI76_RS23780 are separated by 12 nucleotides BWI76_RS23780 and BWI76_RS23785 are separated by 14 nucleotides
BWI76_RS23770: BWI76_RS23770 - LysR family transcriptional regulator, at 4,962,015 to 4,962,911
_RS23770
BWI76_RS23775: BWI76_RS23775 - 3,4-dihydroxybenzoate decarboxylase, at 4,963,127 to 4,964,620
_RS23775
BWI76_RS23780: BWI76_RS23780 - aromatic acid decarboxylase, at 4,964,633 to 4,965,211
_RS23780
BWI76_RS23785: BWI76_RS23785 - hypothetical protein, at 4,965,226 to 4,965,942
_RS23785
Position (kb) 4963
4964
4965 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4962.153 kb on + strand, within BWI76_RS23770 at 4962.157 kb on - strand, within BWI76_RS23770 at 4962.171 kb on - strand, within BWI76_RS23770 at 4962.188 kb on - strand, within BWI76_RS23770 at 4962.202 kb on + strand, within BWI76_RS23770 at 4962.227 kb on - strand, within BWI76_RS23770 at 4962.229 kb on + strand, within BWI76_RS23770 at 4962.230 kb on + strand, within BWI76_RS23770 at 4962.232 kb on - strand, within BWI76_RS23770 at 4962.237 kb on - strand, within BWI76_RS23770 at 4962.237 kb on - strand, within BWI76_RS23770 at 4962.277 kb on - strand, within BWI76_RS23770 at 4962.277 kb on - strand, within BWI76_RS23770 at 4962.305 kb on - strand, within BWI76_RS23770 at 4962.344 kb on - strand, within BWI76_RS23770 at 4962.377 kb on - strand, within BWI76_RS23770 at 4962.381 kb on - strand, within BWI76_RS23770 at 4962.412 kb on + strand, within BWI76_RS23770 at 4962.422 kb on + strand, within BWI76_RS23770 at 4962.422 kb on + strand, within BWI76_RS23770 at 4962.429 kb on - strand, within BWI76_RS23770 at 4962.429 kb on - strand, within BWI76_RS23770 at 4962.431 kb on + strand, within BWI76_RS23770 at 4962.431 kb on + strand, within BWI76_RS23770 at 4962.431 kb on + strand, within BWI76_RS23770 at 4962.431 kb on + strand, within BWI76_RS23770 at 4962.431 kb on + strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.454 kb on + strand, within BWI76_RS23770 at 4962.454 kb on + strand, within BWI76_RS23770 at 4962.454 kb on - strand, within BWI76_RS23770 at 4962.455 kb on - strand, within BWI76_RS23770 at 4962.463 kb on + strand, within BWI76_RS23770 at 4962.463 kb on + strand, within BWI76_RS23770 at 4962.465 kb on - strand, within BWI76_RS23770 at 4962.471 kb on - strand, within BWI76_RS23770 at 4962.476 kb on + strand, within BWI76_RS23770 at 4962.476 kb on + strand, within BWI76_RS23770 at 4962.476 kb on + strand, within BWI76_RS23770 at 4962.476 kb on + strand, within BWI76_RS23770 at 4962.476 kb on + strand, within BWI76_RS23770 at 4962.476 kb on + strand, within BWI76_RS23770 at 4962.477 kb on + strand, within BWI76_RS23770 at 4962.477 kb on + strand, within BWI76_RS23770 at 4962.478 kb on + strand, within BWI76_RS23770 at 4962.484 kb on - strand, within BWI76_RS23770 at 4962.484 kb on - strand, within BWI76_RS23770 at 4962.484 kb on - strand, within BWI76_RS23770 at 4962.484 kb on - strand, within BWI76_RS23770 at 4962.485 kb on - strand, within BWI76_RS23770 at 4962.498 kb on + strand, within BWI76_RS23770 at 4962.506 kb on - strand, within BWI76_RS23770 at 4962.513 kb on + strand, within BWI76_RS23770 at 4962.513 kb on - strand, within BWI76_RS23770 at 4962.532 kb on - strand, within BWI76_RS23770 at 4962.532 kb on - strand, within BWI76_RS23770 at 4962.570 kb on - strand at 4962.571 kb on + strand, within BWI76_RS23770 at 4962.585 kb on + strand, within BWI76_RS23770 at 4962.585 kb on - strand, within BWI76_RS23770 at 4962.625 kb on - strand, within BWI76_RS23770 at 4962.625 kb on - strand, within BWI76_RS23770 at 4962.626 kb on - strand, within BWI76_RS23770 at 4962.638 kb on - strand, within BWI76_RS23770 at 4962.640 kb on + strand, within BWI76_RS23770 at 4962.677 kb on + strand, within BWI76_RS23770 at 4962.683 kb on + strand, within BWI76_RS23770 at 4962.683 kb on + strand, within BWI76_RS23770 at 4962.692 kb on + strand, within BWI76_RS23770 at 4962.701 kb on - strand, within BWI76_RS23770 at 4962.718 kb on - strand, within BWI76_RS23770 at 4962.743 kb on + strand, within BWI76_RS23770 at 4962.751 kb on - strand, within BWI76_RS23770 at 4962.751 kb on - strand, within BWI76_RS23770 at 4962.788 kb on + strand, within BWI76_RS23770 at 4962.788 kb on + strand, within BWI76_RS23770 at 4962.822 kb on + strand at 4962.834 kb on + strand at 4962.834 kb on + strand at 4962.834 kb on + strand at 4962.834 kb on + strand at 4962.834 kb on + strand at 4962.834 kb on + strand at 4962.836 kb on + strand at 4962.842 kb on - strand at 4962.842 kb on - strand at 4962.842 kb on - strand at 4962.842 kb on - strand at 4962.858 kb on + strand at 4962.859 kb on + strand at 4962.862 kb on - strand at 4962.867 kb on + strand at 4962.868 kb on + strand at 4962.908 kb on - strand at 4962.926 kb on + strand at 4962.926 kb on + strand at 4962.942 kb on + strand at 4962.948 kb on + strand at 4962.948 kb on + strand at 4962.950 kb on - strand at 4962.950 kb on - strand at 4963.045 kb on - strand at 4963.058 kb on - strand at 4963.084 kb on + strand at 4963.096 kb on + strand at 4963.104 kb on - strand at 4963.117 kb on + strand at 4963.118 kb on + strand at 4963.118 kb on + strand at 4963.126 kb on - strand at 4963.126 kb on - strand at 4963.129 kb on + strand at 4963.129 kb on - strand at 4963.137 kb on - strand at 4963.166 kb on + strand at 4963.168 kb on - strand at 4963.174 kb on - strand at 4963.174 kb on - strand at 4963.174 kb on - strand at 4963.189 kb on + strand at 4963.189 kb on + strand at 4963.197 kb on - strand at 4963.197 kb on - strand at 4963.204 kb on - strand at 4963.388 kb on - strand, within BWI76_RS23775 at 4963.446 kb on + strand, within BWI76_RS23775 at 4963.480 kb on - strand at 4963.540 kb on + strand, within BWI76_RS23775 at 4963.606 kb on + strand, within BWI76_RS23775 at 4963.614 kb on - strand, within BWI76_RS23775 at 4963.877 kb on + strand, within BWI76_RS23775 at 4963.881 kb on + strand, within BWI76_RS23775 at 4963.891 kb on + strand, within BWI76_RS23775 at 4963.899 kb on - strand, within BWI76_RS23775 at 4963.949 kb on + strand, within BWI76_RS23775 at 4963.984 kb on + strand, within BWI76_RS23775 at 4964.088 kb on - strand, within BWI76_RS23775 at 4964.103 kb on + strand, within BWI76_RS23775 at 4964.103 kb on + strand, within BWI76_RS23775 at 4964.164 kb on + strand, within BWI76_RS23775 at 4964.383 kb on + strand, within BWI76_RS23775 at 4964.383 kb on + strand, within BWI76_RS23775 at 4964.383 kb on + strand, within BWI76_RS23775 at 4964.391 kb on - strand, within BWI76_RS23775 at 4964.391 kb on - strand, within BWI76_RS23775 at 4964.391 kb on - strand, within BWI76_RS23775 at 4964.391 kb on - strand, within BWI76_RS23775 at 4964.449 kb on - strand, within BWI76_RS23775 at 4964.454 kb on + strand, within BWI76_RS23775 at 4964.472 kb on + strand at 4964.545 kb on - strand at 4964.583 kb on + strand at 4964.637 kb on - strand at 4964.637 kb on - strand at 4964.657 kb on - strand at 4964.685 kb on + strand at 4964.843 kb on + strand, within BWI76_RS23780 at 4964.848 kb on + strand, within BWI76_RS23780 at 4964.982 kb on + strand, within BWI76_RS23780 at 4965.163 kb on + strand at 4965.178 kb on + strand at 4965.244 kb on - strand at 4965.335 kb on - strand, within BWI76_RS23785 at 4965.343 kb on - strand, within BWI76_RS23785 at 4965.358 kb on - strand, within BWI76_RS23785 at 4965.535 kb on - strand, within BWI76_RS23785
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL remove 4,962,153 + BWI76_RS23770 0.15 +1.2 4,962,157 - BWI76_RS23770 0.16 +0.7 4,962,171 - BWI76_RS23770 0.17 -0.3 4,962,188 - BWI76_RS23770 0.19 -1.1 4,962,202 + BWI76_RS23770 0.21 -0.7 4,962,227 - BWI76_RS23770 0.24 +2.1 4,962,229 + BWI76_RS23770 0.24 +0.2 4,962,230 + BWI76_RS23770 0.24 -0.1 4,962,232 - BWI76_RS23770 0.24 +0.3 4,962,237 - BWI76_RS23770 0.25 +0.8 4,962,237 - BWI76_RS23770 0.25 +0.9 4,962,277 - BWI76_RS23770 0.29 -0.6 4,962,277 - BWI76_RS23770 0.29 -1.1 4,962,305 - BWI76_RS23770 0.32 -1.8 4,962,344 - BWI76_RS23770 0.37 +2.2 4,962,377 - BWI76_RS23770 0.40 +0.7 4,962,381 - BWI76_RS23770 0.41 -2.8 4,962,412 + BWI76_RS23770 0.44 +0.7 4,962,422 + BWI76_RS23770 0.45 +0.1 4,962,422 + BWI76_RS23770 0.45 +0.8 4,962,429 - BWI76_RS23770 0.46 +1.2 4,962,429 - BWI76_RS23770 0.46 -0.3 4,962,431 + BWI76_RS23770 0.46 -0.1 4,962,431 + BWI76_RS23770 0.46 +0.9 4,962,431 + BWI76_RS23770 0.46 -0.8 4,962,431 + BWI76_RS23770 0.46 +0.1 4,962,431 + BWI76_RS23770 0.46 +0.6 4,962,439 - BWI76_RS23770 0.47 -1.3 4,962,439 - BWI76_RS23770 0.47 -0.3 4,962,439 - BWI76_RS23770 0.47 -0.3 4,962,439 - BWI76_RS23770 0.47 +0.2 4,962,439 - BWI76_RS23770 0.47 -3.2 4,962,439 - BWI76_RS23770 0.47 +0.5 4,962,439 - BWI76_RS23770 0.47 +0.1 4,962,439 - BWI76_RS23770 0.47 -1.6 4,962,439 - BWI76_RS23770 0.47 -1.3 4,962,439 - BWI76_RS23770 0.47 +1.0 4,962,439 - BWI76_RS23770 0.47 -1.8 4,962,439 - BWI76_RS23770 0.47 +1.3 4,962,454 + BWI76_RS23770 0.49 +0.2 4,962,454 + BWI76_RS23770 0.49 +0.3 4,962,454 - BWI76_RS23770 0.49 +0.9 4,962,455 - BWI76_RS23770 0.49 -1.6 4,962,463 + BWI76_RS23770 0.50 +0.7 4,962,463 + BWI76_RS23770 0.50 +2.7 4,962,465 - BWI76_RS23770 0.50 +0.4 4,962,471 - BWI76_RS23770 0.51 +0.4 4,962,476 + BWI76_RS23770 0.51 -0.3 4,962,476 + BWI76_RS23770 0.51 -2.0 4,962,476 + BWI76_RS23770 0.51 +1.4 4,962,476 + BWI76_RS23770 0.51 -0.3 4,962,476 + BWI76_RS23770 0.51 +0.8 4,962,476 + BWI76_RS23770 0.51 -1.9 4,962,477 + BWI76_RS23770 0.52 -0.1 4,962,477 + BWI76_RS23770 0.52 -2.6 4,962,478 + BWI76_RS23770 0.52 -0.8 4,962,484 - BWI76_RS23770 0.52 +0.4 4,962,484 - BWI76_RS23770 0.52 +1.4 4,962,484 - BWI76_RS23770 0.52 -0.5 4,962,484 - BWI76_RS23770 0.52 -0.3 4,962,485 - BWI76_RS23770 0.52 -0.6 4,962,498 + BWI76_RS23770 0.54 -0.3 4,962,506 - BWI76_RS23770 0.55 -0.9 4,962,513 + BWI76_RS23770 0.56 -0.7 4,962,513 - BWI76_RS23770 0.56 +0.4 4,962,532 - BWI76_RS23770 0.58 -2.2 4,962,532 - BWI76_RS23770 0.58 +0.3 4,962,570 - +0.2 4,962,571 + BWI76_RS23770 0.62 -1.1 4,962,585 + BWI76_RS23770 0.64 +0.2 4,962,585 - BWI76_RS23770 0.64 +0.4 4,962,625 - BWI76_RS23770 0.68 -1.7 4,962,625 - BWI76_RS23770 0.68 -1.3 4,962,626 - BWI76_RS23770 0.68 +1.2 4,962,638 - BWI76_RS23770 0.69 +1.0 4,962,640 + BWI76_RS23770 0.70 +1.9 4,962,677 + BWI76_RS23770 0.74 -3.0 4,962,683 + BWI76_RS23770 0.74 +0.5 4,962,683 + BWI76_RS23770 0.74 -0.2 4,962,692 + BWI76_RS23770 0.75 +0.2 4,962,701 - BWI76_RS23770 0.76 +0.9 4,962,718 - BWI76_RS23770 0.78 -1.8 4,962,743 + BWI76_RS23770 0.81 -0.3 4,962,751 - BWI76_RS23770 0.82 +0.2 4,962,751 - BWI76_RS23770 0.82 +0.6 4,962,788 + BWI76_RS23770 0.86 +0.7 4,962,788 + BWI76_RS23770 0.86 +0.0 4,962,822 + +0.4 4,962,834 + +0.0 4,962,834 + -0.3 4,962,834 + -1.1 4,962,834 + +0.2 4,962,834 + -0.2 4,962,834 + +0.9 4,962,836 + +0.5 4,962,842 - +0.3 4,962,842 - -0.4 4,962,842 - +0.2 4,962,842 - +1.1 4,962,858 + -2.6 4,962,859 + +0.4 4,962,862 - -1.3 4,962,867 + -3.4 4,962,868 + -1.1 4,962,908 - -0.3 4,962,926 + -0.8 4,962,926 + +0.8 4,962,942 + -0.8 4,962,948 + -1.6 4,962,948 + +0.9 4,962,950 - -2.1 4,962,950 - +0.0 4,963,045 - +0.5 4,963,058 - -0.2 4,963,084 + -0.6 4,963,096 + +3.9 4,963,104 - -0.5 4,963,117 + +0.3 4,963,118 + -1.0 4,963,118 + +1.2 4,963,126 - -2.1 4,963,126 - +0.2 4,963,129 + +0.2 4,963,129 - -0.8 4,963,137 - +0.7 4,963,166 + +0.3 4,963,168 - -1.8 4,963,174 - -0.1 4,963,174 - +1.6 4,963,174 - -0.2 4,963,189 + +1.2 4,963,189 + +0.2 4,963,197 - +3.9 4,963,197 - +0.2 4,963,204 - -0.5 4,963,388 - BWI76_RS23775 0.17 -0.4 4,963,446 + BWI76_RS23775 0.21 -1.3 4,963,480 - +1.2 4,963,540 + BWI76_RS23775 0.28 -0.4 4,963,606 + BWI76_RS23775 0.32 -0.5 4,963,614 - BWI76_RS23775 0.33 -0.6 4,963,877 + BWI76_RS23775 0.50 -0.4 4,963,881 + BWI76_RS23775 0.50 -0.3 4,963,891 + BWI76_RS23775 0.51 -0.3 4,963,899 - BWI76_RS23775 0.52 +0.8 4,963,949 + BWI76_RS23775 0.55 -0.2 4,963,984 + BWI76_RS23775 0.57 +0.4 4,964,088 - BWI76_RS23775 0.64 -2.8 4,964,103 + BWI76_RS23775 0.65 -1.7 4,964,103 + BWI76_RS23775 0.65 -0.9 4,964,164 + BWI76_RS23775 0.69 -1.6 4,964,383 + BWI76_RS23775 0.84 +1.1 4,964,383 + BWI76_RS23775 0.84 +0.0 4,964,383 + BWI76_RS23775 0.84 +0.2 4,964,391 - BWI76_RS23775 0.85 -0.0 4,964,391 - BWI76_RS23775 0.85 -0.4 4,964,391 - BWI76_RS23775 0.85 -0.8 4,964,391 - BWI76_RS23775 0.85 -2.6 4,964,449 - BWI76_RS23775 0.88 -0.7 4,964,454 + BWI76_RS23775 0.89 +1.3 4,964,472 + +0.3 4,964,545 - -2.4 4,964,583 + -0.3 4,964,637 - -2.5 4,964,637 - +1.2 4,964,657 - -0.1 4,964,685 + +0.2 4,964,843 + BWI76_RS23780 0.36 -0.3 4,964,848 + BWI76_RS23780 0.37 +0.2 4,964,982 + BWI76_RS23780 0.60 -0.2 4,965,163 + -1.1 4,965,178 + +0.4 4,965,244 - -1.1 4,965,335 - BWI76_RS23785 0.15 +1.2 4,965,343 - BWI76_RS23785 0.16 +0.0 4,965,358 - BWI76_RS23785 0.18 +1.2 4,965,535 - BWI76_RS23785 0.43 +0.3
Or see this region's nucleotide sequence