Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23595 and BWI76_RS23600 are separated by 11 nucleotides BWI76_RS23600 and BWI76_RS23605 are separated by 269 nucleotides BWI76_RS23605 and BWI76_RS23610 are separated by 6 nucleotides BWI76_RS23610 and BWI76_RS23615 are separated by 9 nucleotides
BWI76_RS23595: BWI76_RS23595 - N-acetyltransferase, at 4,921,191 to 4,921,463
_RS23595
BWI76_RS23600: BWI76_RS23600 - hypothetical protein, at 4,921,475 to 4,921,705
_RS23600
BWI76_RS23605: BWI76_RS23605 - hypothetical protein, at 4,921,975 to 4,922,247
_RS23605
BWI76_RS23610: BWI76_RS23610 - multidrug transporter subunit MdtN, at 4,922,254 to 4,923,282
_RS23610
BWI76_RS23615: BWI76_RS23615 - multidrug transporter, at 4,923,292 to 4,925,235
_RS23615
Position (kb) 4922
4923
4924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4921.269 kb on - strand, within BWI76_RS23595 at 4921.328 kb on + strand, within BWI76_RS23595 at 4921.328 kb on - strand, within BWI76_RS23595 at 4921.363 kb on + strand, within BWI76_RS23595 at 4921.363 kb on + strand, within BWI76_RS23595 at 4921.363 kb on + strand, within BWI76_RS23595 at 4921.363 kb on + strand, within BWI76_RS23595 at 4921.371 kb on - strand, within BWI76_RS23595 at 4921.371 kb on - strand, within BWI76_RS23595 at 4921.378 kb on + strand, within BWI76_RS23595 at 4921.448 kb on - strand at 4921.490 kb on + strand at 4921.497 kb on - strand at 4921.498 kb on - strand, within BWI76_RS23600 at 4921.502 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.516 kb on + strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.522 kb on + strand, within BWI76_RS23600 at 4921.522 kb on + strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.531 kb on - strand, within BWI76_RS23600 at 4921.535 kb on + strand, within BWI76_RS23600 at 4921.543 kb on - strand, within BWI76_RS23600 at 4921.546 kb on + strand, within BWI76_RS23600 at 4921.559 kb on + strand, within BWI76_RS23600 at 4921.588 kb on + strand, within BWI76_RS23600 at 4921.589 kb on - strand, within BWI76_RS23600 at 4921.616 kb on - strand, within BWI76_RS23600 at 4921.627 kb on - strand, within BWI76_RS23600 at 4921.635 kb on + strand, within BWI76_RS23600 at 4921.643 kb on - strand, within BWI76_RS23600 at 4921.665 kb on + strand, within BWI76_RS23600 at 4921.665 kb on + strand, within BWI76_RS23600 at 4921.665 kb on + strand, within BWI76_RS23600 at 4921.665 kb on + strand, within BWI76_RS23600 at 4921.673 kb on - strand, within BWI76_RS23600 at 4921.673 kb on - strand, within BWI76_RS23600 at 4921.750 kb on + strand at 4921.758 kb on - strand at 4921.760 kb on + strand at 4921.760 kb on + strand at 4921.760 kb on + strand at 4921.768 kb on - strand at 4921.839 kb on + strand at 4921.891 kb on + strand at 4921.893 kb on + strand at 4921.901 kb on - strand at 4921.930 kb on + strand at 4921.938 kb on - strand at 4921.938 kb on - strand at 4921.945 kb on + strand at 4921.945 kb on + strand at 4921.945 kb on + strand at 4921.953 kb on - strand at 4921.953 kb on - strand at 4921.953 kb on - strand at 4921.953 kb on - strand at 4921.960 kb on + strand at 4921.985 kb on - strand at 4922.009 kb on - strand, within BWI76_RS23605 at 4922.037 kb on - strand, within BWI76_RS23605 at 4922.037 kb on - strand, within BWI76_RS23605 at 4922.050 kb on - strand, within BWI76_RS23605 at 4922.062 kb on + strand, within BWI76_RS23605 at 4922.064 kb on + strand, within BWI76_RS23605 at 4922.126 kb on - strand, within BWI76_RS23605 at 4922.129 kb on + strand, within BWI76_RS23605 at 4922.129 kb on + strand, within BWI76_RS23605 at 4922.129 kb on + strand, within BWI76_RS23605 at 4922.137 kb on - strand, within BWI76_RS23605 at 4922.143 kb on - strand, within BWI76_RS23605 at 4922.178 kb on + strand, within BWI76_RS23605 at 4922.179 kb on + strand, within BWI76_RS23605 at 4922.179 kb on + strand, within BWI76_RS23605 at 4922.189 kb on - strand, within BWI76_RS23605 at 4922.202 kb on - strand, within BWI76_RS23605 at 4922.218 kb on + strand, within BWI76_RS23605 at 4922.218 kb on + strand, within BWI76_RS23605 at 4922.235 kb on - strand at 4922.244 kb on + strand at 4922.257 kb on + strand at 4922.259 kb on - strand at 4922.416 kb on - strand, within BWI76_RS23610 at 4922.484 kb on - strand, within BWI76_RS23610 at 4922.569 kb on - strand, within BWI76_RS23610 at 4922.773 kb on - strand, within BWI76_RS23610 at 4922.802 kb on - strand, within BWI76_RS23610 at 4922.893 kb on + strand, within BWI76_RS23610 at 4923.088 kb on - strand, within BWI76_RS23610 at 4923.307 kb on - strand at 4923.334 kb on + strand at 4923.374 kb on + strand at 4923.396 kb on + strand at 4923.408 kb on + strand at 4923.558 kb on - strand, within BWI76_RS23615 at 4923.605 kb on + strand, within BWI76_RS23615 at 4923.788 kb on + strand, within BWI76_RS23615 at 4923.859 kb on + strand, within BWI76_RS23615
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL remove 4,921,269 - BWI76_RS23595 0.29 +0.7 4,921,328 + BWI76_RS23595 0.50 -0.6 4,921,328 - BWI76_RS23595 0.50 -2.0 4,921,363 + BWI76_RS23595 0.63 +0.8 4,921,363 + BWI76_RS23595 0.63 +0.8 4,921,363 + BWI76_RS23595 0.63 +1.2 4,921,363 + BWI76_RS23595 0.63 -1.0 4,921,371 - BWI76_RS23595 0.66 +1.4 4,921,371 - BWI76_RS23595 0.66 -0.8 4,921,378 + BWI76_RS23595 0.68 +0.9 4,921,448 - +1.0 4,921,490 + +0.5 4,921,497 - +1.5 4,921,498 - BWI76_RS23600 0.10 -0.1 4,921,502 + BWI76_RS23600 0.12 -1.1 4,921,511 + BWI76_RS23600 0.16 +0.8 4,921,511 + BWI76_RS23600 0.16 +0.7 4,921,511 + BWI76_RS23600 0.16 -1.7 4,921,511 + BWI76_RS23600 0.16 -0.0 4,921,511 + BWI76_RS23600 0.16 -0.4 4,921,516 + BWI76_RS23600 0.18 +0.4 4,921,519 - BWI76_RS23600 0.19 -0.2 4,921,519 - BWI76_RS23600 0.19 -0.1 4,921,519 - BWI76_RS23600 0.19 -0.4 4,921,519 - BWI76_RS23600 0.19 -0.8 4,921,519 - BWI76_RS23600 0.19 +0.5 4,921,519 - BWI76_RS23600 0.19 -0.1 4,921,521 + BWI76_RS23600 0.20 +0.4 4,921,521 + BWI76_RS23600 0.20 +0.0 4,921,521 + BWI76_RS23600 0.20 -1.8 4,921,521 + BWI76_RS23600 0.20 +0.5 4,921,521 + BWI76_RS23600 0.20 -1.2 4,921,522 + BWI76_RS23600 0.20 +1.3 4,921,522 + BWI76_RS23600 0.20 -0.6 4,921,529 - BWI76_RS23600 0.23 +1.7 4,921,529 - BWI76_RS23600 0.23 -3.4 4,921,529 - BWI76_RS23600 0.23 -0.6 4,921,529 - BWI76_RS23600 0.23 -2.0 4,921,529 - BWI76_RS23600 0.23 +0.7 4,921,531 - BWI76_RS23600 0.24 +0.3 4,921,535 + BWI76_RS23600 0.26 +0.0 4,921,543 - BWI76_RS23600 0.29 +0.8 4,921,546 + BWI76_RS23600 0.31 -0.2 4,921,559 + BWI76_RS23600 0.36 +0.0 4,921,588 + BWI76_RS23600 0.49 +0.6 4,921,589 - BWI76_RS23600 0.49 +0.3 4,921,616 - BWI76_RS23600 0.61 -0.2 4,921,627 - BWI76_RS23600 0.66 +1.0 4,921,635 + BWI76_RS23600 0.69 +0.3 4,921,643 - BWI76_RS23600 0.73 -0.9 4,921,665 + BWI76_RS23600 0.82 -1.4 4,921,665 + BWI76_RS23600 0.82 -3.1 4,921,665 + BWI76_RS23600 0.82 +0.2 4,921,665 + BWI76_RS23600 0.82 +1.3 4,921,673 - BWI76_RS23600 0.86 +0.3 4,921,673 - BWI76_RS23600 0.86 +0.2 4,921,750 + -0.4 4,921,758 - -2.4 4,921,760 + +0.8 4,921,760 + +0.2 4,921,760 + -1.1 4,921,768 - -0.4 4,921,839 + -0.2 4,921,891 + -0.4 4,921,893 + +0.1 4,921,901 - +0.1 4,921,930 + -0.3 4,921,938 - +1.3 4,921,938 - -0.1 4,921,945 + +1.8 4,921,945 + +0.3 4,921,945 + -2.0 4,921,953 - -2.4 4,921,953 - -0.1 4,921,953 - -1.8 4,921,953 - +1.4 4,921,960 + -0.6 4,921,985 - -1.3 4,922,009 - BWI76_RS23605 0.12 -0.4 4,922,037 - BWI76_RS23605 0.23 -1.6 4,922,037 - BWI76_RS23605 0.23 +0.1 4,922,050 - BWI76_RS23605 0.27 +1.4 4,922,062 + BWI76_RS23605 0.32 +0.2 4,922,064 + BWI76_RS23605 0.33 +0.9 4,922,126 - BWI76_RS23605 0.55 +0.7 4,922,129 + BWI76_RS23605 0.56 -1.4 4,922,129 + BWI76_RS23605 0.56 +1.7 4,922,129 + BWI76_RS23605 0.56 -0.5 4,922,137 - BWI76_RS23605 0.59 -0.4 4,922,143 - BWI76_RS23605 0.62 -0.1 4,922,178 + BWI76_RS23605 0.74 -0.7 4,922,179 + BWI76_RS23605 0.75 -1.0 4,922,179 + BWI76_RS23605 0.75 +0.4 4,922,189 - BWI76_RS23605 0.78 -1.6 4,922,202 - BWI76_RS23605 0.83 -2.6 4,922,218 + BWI76_RS23605 0.89 +0.6 4,922,218 + BWI76_RS23605 0.89 +1.6 4,922,235 - -1.1 4,922,244 + -0.1 4,922,257 + -0.6 4,922,259 - +0.7 4,922,416 - BWI76_RS23610 0.16 +0.3 4,922,484 - BWI76_RS23610 0.22 +0.9 4,922,569 - BWI76_RS23610 0.31 +0.6 4,922,773 - BWI76_RS23610 0.50 +0.2 4,922,802 - BWI76_RS23610 0.53 +0.0 4,922,893 + BWI76_RS23610 0.62 +1.1 4,923,088 - BWI76_RS23610 0.81 +1.2 4,923,307 - +0.1 4,923,334 + +0.7 4,923,374 + +0.4 4,923,396 + -1.0 4,923,408 + +0.9 4,923,558 - BWI76_RS23615 0.14 +1.2 4,923,605 + BWI76_RS23615 0.16 +2.2 4,923,788 + BWI76_RS23615 0.26 +1.2 4,923,859 + BWI76_RS23615 0.29 +0.2
Or see this region's nucleotide sequence