Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23525 and BWI76_RS23530 are separated by 80 nucleotides BWI76_RS23530 and BWI76_RS23535 are separated by 83 nucleotides BWI76_RS23535 and BWI76_RS23540 are separated by 149 nucleotides
BWI76_RS23525: BWI76_RS23525 - EamA family transporter, at 4,907,539 to 4,908,429
_RS23525
BWI76_RS23530: BWI76_RS23530 - MarR family transcriptional regulator, at 4,908,510 to 4,909,016
_RS23530
BWI76_RS23535: BWI76_RS23535 - hypothetical protein, at 4,909,100 to 4,909,561
_RS23535
BWI76_RS23540: BWI76_RS23540 - putative lysine exporter protein, at 4,909,711 to 4,910,322
_RS23540
Position (kb) 4908
4909
4910 Strain fitness (log2 ratio) -2
-1
0
1 at 4907.526 kb on + strand at 4907.534 kb on - strand at 4907.597 kb on + strand at 4907.753 kb on + strand, within BWI76_RS23525 at 4907.792 kb on - strand, within BWI76_RS23525 at 4907.792 kb on - strand, within BWI76_RS23525 at 4907.796 kb on - strand, within BWI76_RS23525 at 4907.819 kb on - strand, within BWI76_RS23525 at 4907.999 kb on - strand, within BWI76_RS23525 at 4908.128 kb on + strand, within BWI76_RS23525 at 4908.193 kb on - strand, within BWI76_RS23525 at 4908.522 kb on + strand at 4908.525 kb on - strand at 4908.527 kb on + strand at 4908.630 kb on - strand, within BWI76_RS23530 at 4908.742 kb on - strand, within BWI76_RS23530 at 4908.880 kb on + strand, within BWI76_RS23530 at 4908.987 kb on + strand at 4909.019 kb on - strand at 4909.091 kb on + strand at 4909.099 kb on - strand at 4909.161 kb on - strand, within BWI76_RS23535 at 4909.193 kb on - strand, within BWI76_RS23535 at 4909.247 kb on - strand, within BWI76_RS23535 at 4909.692 kb on + strand at 4909.705 kb on - strand at 4909.705 kb on - strand at 4909.705 kb on - strand at 4909.783 kb on + strand, within BWI76_RS23540 at 4910.010 kb on - strand, within BWI76_RS23540
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL remove 4,907,526 + -2.1 4,907,534 - +0.6 4,907,597 + +0.7 4,907,753 + BWI76_RS23525 0.24 -1.3 4,907,792 - BWI76_RS23525 0.28 +0.2 4,907,792 - BWI76_RS23525 0.28 +0.8 4,907,796 - BWI76_RS23525 0.29 -0.2 4,907,819 - BWI76_RS23525 0.31 -0.8 4,907,999 - BWI76_RS23525 0.52 +1.4 4,908,128 + BWI76_RS23525 0.66 -2.7 4,908,193 - BWI76_RS23525 0.73 -0.0 4,908,522 + -1.1 4,908,525 - -0.1 4,908,527 + +0.5 4,908,630 - BWI76_RS23530 0.24 +0.2 4,908,742 - BWI76_RS23530 0.46 +1.4 4,908,880 + BWI76_RS23530 0.73 +1.2 4,908,987 + -0.4 4,909,019 - -0.6 4,909,091 + +1.4 4,909,099 - +1.7 4,909,161 - BWI76_RS23535 0.13 -0.2 4,909,193 - BWI76_RS23535 0.20 -0.3 4,909,247 - BWI76_RS23535 0.32 -0.8 4,909,692 + -0.1 4,909,705 - -0.6 4,909,705 - +0.4 4,909,705 - -1.4 4,909,783 + BWI76_RS23540 0.12 -1.5 4,910,010 - BWI76_RS23540 0.49 +0.2
Or see this region's nucleotide sequence