Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14710

Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14705 and BWI76_RS14710 are separated by 919 nucleotidesBWI76_RS14710 and BWI76_RS14715 are separated by 49 nucleotidesBWI76_RS14715 and BWI76_RS14720 overlap by 20 nucleotides BWI76_RS14705: BWI76_RS14705 - SefA, at 3,087,495 to 3,088,040 _RS14705 BWI76_RS14710: BWI76_RS14710 - FAD-dependent oxidoreductase, at 3,088,960 to 3,090,282 _RS14710 BWI76_RS14715: BWI76_RS14715 - type I methionyl aminopeptidase, at 3,090,332 to 3,091,111 _RS14715 BWI76_RS14720: BWI76_RS14720 - hypothetical protein, at 3,091,092 to 3,091,310 _RS14720 Position (kb) 3088 3089 3090 3091Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3087.971 kb on - strand, within BWI76_RS14705at 3087.972 kb on + strand, within BWI76_RS14705at 3087.990 kb on + strandat 3087.997 kb on + strandat 3087.997 kb on + strandat 3087.997 kb on + strandat 3087.997 kb on - strandat 3087.997 kb on - strandat 3087.997 kb on - strandat 3088.005 kb on - strandat 3088.005 kb on - strandat 3088.005 kb on - strandat 3088.005 kb on - strandat 3088.005 kb on - strandat 3088.005 kb on - strandat 3088.007 kb on - strandat 3088.016 kb on - strandat 3088.099 kb on - strandat 3088.110 kb on - strandat 3088.271 kb on - strandat 3088.284 kb on + strandat 3088.521 kb on + strandat 3088.529 kb on - strandat 3088.539 kb on - strandat 3088.574 kb on + strandat 3088.585 kb on + strandat 3088.590 kb on + strandat 3088.591 kb on + strandat 3088.623 kb on - strandat 3088.666 kb on + strandat 3088.666 kb on + strandat 3088.703 kb on - strandat 3088.773 kb on - strandat 3088.800 kb on + strandat 3088.825 kb on + strandat 3088.825 kb on + strandat 3088.825 kb on + strandat 3088.825 kb on + strandat 3088.825 kb on + strandat 3088.825 kb on + strandat 3088.825 kb on + strandat 3088.825 kb on + strandat 3088.825 kb on + strandat 3088.825 kb on + strandat 3088.825 kb on + strandat 3088.833 kb on - strandat 3088.833 kb on - strandat 3088.833 kb on - strandat 3088.833 kb on - strandat 3088.833 kb on - strandat 3088.833 kb on - strandat 3088.833 kb on - strandat 3088.833 kb on - strandat 3088.833 kb on - strandat 3088.833 kb on - strandat 3088.847 kb on + strandat 3088.855 kb on - strandat 3088.855 kb on - strandat 3088.855 kb on - strandat 3088.859 kb on + strandat 3088.859 kb on + strandat 3088.864 kb on + strandat 3088.864 kb on + strandat 3088.867 kb on - strandat 3088.867 kb on - strandat 3088.872 kb on - strandat 3088.914 kb on + strandat 3088.919 kb on + strandat 3089.023 kb on - strandat 3089.052 kb on + strandat 3089.060 kb on - strandat 3089.120 kb on + strand, within BWI76_RS14710at 3089.141 kb on - strand, within BWI76_RS14710at 3089.227 kb on - strand, within BWI76_RS14710at 3089.405 kb on + strand, within BWI76_RS14710at 3089.424 kb on + strand, within BWI76_RS14710at 3089.836 kb on - strand, within BWI76_RS14710at 3090.044 kb on - strand, within BWI76_RS14710at 3090.516 kb on - strand, within BWI76_RS14715at 3090.652 kb on - strand, within BWI76_RS14715at 3090.693 kb on + strand, within BWI76_RS14715at 3091.003 kb on - strand, within BWI76_RS14715at 3091.020 kb on - strand, within BWI76_RS14715

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
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3,087,971 - BWI76_RS14705 0.87 -1.8
3,087,972 + BWI76_RS14705 0.87 +1.0
3,087,990 + +1.0
3,087,997 + -0.6
3,087,997 + -2.4
3,087,997 + +1.0
3,087,997 - -2.0
3,087,997 - +0.0
3,087,997 - -2.0
3,088,005 - +1.0
3,088,005 - +0.3
3,088,005 - -2.9
3,088,005 - +2.3
3,088,005 - -0.8
3,088,005 - -0.6
3,088,007 - -0.6
3,088,016 - +1.0
3,088,099 - -0.5
3,088,110 - -0.7
3,088,271 - +1.0
3,088,284 + +0.2
3,088,521 + +0.0
3,088,529 - -0.1
3,088,539 - +0.2
3,088,574 + -1.1
3,088,585 + -1.3
3,088,590 + +2.0
3,088,591 + +0.3
3,088,623 - +0.0
3,088,666 + +0.8
3,088,666 + -1.2
3,088,703 - +0.5
3,088,773 - -2.0
3,088,800 + -0.2
3,088,825 + -0.0
3,088,825 + +0.2
3,088,825 + +0.2
3,088,825 + -0.9
3,088,825 + +0.5
3,088,825 + +0.8
3,088,825 + +1.0
3,088,825 + -0.1
3,088,825 + +0.0
3,088,825 + -0.2
3,088,825 + -1.0
3,088,833 - -0.1
3,088,833 - -0.7
3,088,833 - +0.4
3,088,833 - +1.3
3,088,833 - +1.4
3,088,833 - +0.2
3,088,833 - +0.3
3,088,833 - -0.4
3,088,833 - -1.4
3,088,833 - -2.6
3,088,847 + +1.0
3,088,855 - +0.0
3,088,855 - -2.9
3,088,855 - -1.2
3,088,859 + +2.6
3,088,859 + +0.1
3,088,864 + +0.1
3,088,864 + +0.8
3,088,867 - -0.9
3,088,867 - +0.9
3,088,872 - -1.6
3,088,914 + +0.6
3,088,919 + +0.4
3,089,023 - -0.1
3,089,052 + -0.6
3,089,060 - -1.7
3,089,120 + BWI76_RS14710 0.12 -1.3
3,089,141 - BWI76_RS14710 0.14 -1.4
3,089,227 - BWI76_RS14710 0.20 -3.0
3,089,405 + BWI76_RS14710 0.34 -0.8
3,089,424 + BWI76_RS14710 0.35 +0.3
3,089,836 - BWI76_RS14710 0.66 -0.3
3,090,044 - BWI76_RS14710 0.82 -1.1
3,090,516 - BWI76_RS14715 0.24 -0.1
3,090,652 - BWI76_RS14715 0.41 +0.5
3,090,693 + BWI76_RS14715 0.46 -1.0
3,091,003 - BWI76_RS14715 0.86 -1.3
3,091,020 - BWI76_RS14715 0.88 -4.1

Or see this region's nucleotide sequence