Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12905 and BWI76_RS12910 are separated by 348 nucleotides BWI76_RS12910 and BWI76_RS12915 are separated by 17 nucleotides
BWI76_RS12905: BWI76_RS12905 - LysR family transcriptional regulator, at 2,688,620 to 2,689,588
_RS12905
BWI76_RS12910: BWI76_RS12910 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 2,689,937 to 2,690,743
_RS12910
BWI76_RS12915: BWI76_RS12915 - 4-hydroxyphenylacetate permease, at 2,690,761 to 2,692,134
_RS12915
Position (kb)
2689
2690
2691 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2688.981 kb on + strand, within BWI76_RS12905 at 2688.989 kb on - strand, within BWI76_RS12905 at 2688.989 kb on - strand, within BWI76_RS12905 at 2689.008 kb on - strand, within BWI76_RS12905 at 2689.014 kb on + strand, within BWI76_RS12905 at 2689.016 kb on + strand, within BWI76_RS12905 at 2689.024 kb on + strand, within BWI76_RS12905 at 2689.028 kb on - strand, within BWI76_RS12905 at 2689.031 kb on + strand, within BWI76_RS12905 at 2689.039 kb on + strand, within BWI76_RS12905 at 2689.039 kb on + strand, within BWI76_RS12905 at 2689.047 kb on - strand, within BWI76_RS12905 at 2689.047 kb on - strand, within BWI76_RS12905 at 2689.047 kb on - strand, within BWI76_RS12905 at 2689.047 kb on - strand, within BWI76_RS12905 at 2689.106 kb on - strand, within BWI76_RS12905 at 2689.106 kb on - strand, within BWI76_RS12905 at 2689.106 kb on - strand, within BWI76_RS12905 at 2689.108 kb on + strand, within BWI76_RS12905 at 2689.108 kb on + strand, within BWI76_RS12905 at 2689.119 kb on + strand, within BWI76_RS12905 at 2689.121 kb on + strand, within BWI76_RS12905 at 2689.126 kb on + strand, within BWI76_RS12905 at 2689.126 kb on + strand, within BWI76_RS12905 at 2689.127 kb on - strand, within BWI76_RS12905 at 2689.131 kb on + strand, within BWI76_RS12905 at 2689.207 kb on + strand, within BWI76_RS12905 at 2689.265 kb on + strand, within BWI76_RS12905 at 2689.369 kb on - strand at 2689.506 kb on + strand at 2689.509 kb on - strand at 2689.539 kb on - strand at 2689.751 kb on - strand at 2689.758 kb on - strand at 2689.870 kb on + strand at 2689.870 kb on + strand at 2689.870 kb on + strand at 2689.870 kb on + strand at 2689.870 kb on + strand at 2689.878 kb on - strand at 2689.878 kb on - strand at 2689.883 kb on + strand at 2689.911 kb on - strand at 2689.920 kb on + strand at 2689.920 kb on + strand at 2689.928 kb on - strand at 2690.001 kb on + strand at 2690.010 kb on + strand at 2690.017 kb on + strand at 2690.067 kb on + strand, within BWI76_RS12910 at 2690.149 kb on - strand, within BWI76_RS12910 at 2690.251 kb on - strand, within BWI76_RS12910 at 2690.780 kb on - strand at 2690.823 kb on + strand at 2690.978 kb on - strand, within BWI76_RS12915 at 2691.044 kb on - strand, within BWI76_RS12915 at 2691.073 kb on + strand, within BWI76_RS12915 at 2691.073 kb on + strand, within BWI76_RS12915 at 2691.369 kb on + strand, within BWI76_RS12915 at 2691.714 kb on + strand, within BWI76_RS12915
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL remove 2,688,981 + BWI76_RS12905 0.37 +0.7 2,688,989 - BWI76_RS12905 0.38 -1.0 2,688,989 - BWI76_RS12905 0.38 +0.1 2,689,008 - BWI76_RS12905 0.40 -0.6 2,689,014 + BWI76_RS12905 0.41 +0.7 2,689,016 + BWI76_RS12905 0.41 -2.7 2,689,024 + BWI76_RS12905 0.42 -2.3 2,689,028 - BWI76_RS12905 0.42 -1.8 2,689,031 + BWI76_RS12905 0.42 +1.2 2,689,039 + BWI76_RS12905 0.43 -0.4 2,689,039 + BWI76_RS12905 0.43 +0.4 2,689,047 - BWI76_RS12905 0.44 +0.0 2,689,047 - BWI76_RS12905 0.44 -1.1 2,689,047 - BWI76_RS12905 0.44 -1.6 2,689,047 - BWI76_RS12905 0.44 +0.2 2,689,106 - BWI76_RS12905 0.50 -0.1 2,689,106 - BWI76_RS12905 0.50 +2.2 2,689,106 - BWI76_RS12905 0.50 -2.6 2,689,108 + BWI76_RS12905 0.50 -0.6 2,689,108 + BWI76_RS12905 0.50 -0.4 2,689,119 + BWI76_RS12905 0.51 +2.3 2,689,121 + BWI76_RS12905 0.52 -2.8 2,689,126 + BWI76_RS12905 0.52 -0.6 2,689,126 + BWI76_RS12905 0.52 -0.4 2,689,127 - BWI76_RS12905 0.52 -1.9 2,689,131 + BWI76_RS12905 0.53 -0.6 2,689,207 + BWI76_RS12905 0.61 -3.5 2,689,265 + BWI76_RS12905 0.67 -1.0 2,689,369 - +1.0 2,689,506 + +1.0 2,689,509 - +0.5 2,689,539 - +2.1 2,689,751 - +0.8 2,689,758 - +0.1 2,689,870 + +0.4 2,689,870 + +0.2 2,689,870 + -1.3 2,689,870 + -0.4 2,689,870 + -0.3 2,689,878 - -0.6 2,689,878 - -1.0 2,689,883 + -0.3 2,689,911 - -0.8 2,689,920 + +0.6 2,689,920 + +0.2 2,689,928 - -0.4 2,690,001 + +0.3 2,690,010 + -0.4 2,690,017 + +1.3 2,690,067 + BWI76_RS12910 0.16 -0.7 2,690,149 - BWI76_RS12910 0.26 +0.7 2,690,251 - BWI76_RS12910 0.39 +3.0 2,690,780 - +2.0 2,690,823 + +0.1 2,690,978 - BWI76_RS12915 0.16 -0.8 2,691,044 - BWI76_RS12915 0.21 +1.2 2,691,073 + BWI76_RS12915 0.23 -2.3 2,691,073 + BWI76_RS12915 0.23 +1.1 2,691,369 + BWI76_RS12915 0.44 -0.3 2,691,714 + BWI76_RS12915 0.69 -0.3
Or see this region's nucleotide sequence