Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03405 and BWI76_RS03410 are separated by 473 nucleotides BWI76_RS03410 and BWI76_RS03415 are separated by 195 nucleotides
BWI76_RS03405: BWI76_RS03405 - DNA/RNA non-specific endonuclease, at 700,647 to 701,351
_RS03405
BWI76_RS03410: BWI76_RS03410 - hypothetical protein, at 701,825 to 702,856
_RS03410
BWI76_RS03415: BWI76_RS03415 - LacI family transcriptional regulator, at 703,052 to 704,080
_RS03415
Position (kb) 701
702
703 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 700.844 kb on + strand, within BWI76_RS03405 at 700.887 kb on + strand, within BWI76_RS03405 at 700.900 kb on - strand, within BWI76_RS03405 at 700.929 kb on - strand, within BWI76_RS03405 at 701.005 kb on - strand, within BWI76_RS03405 at 701.042 kb on + strand, within BWI76_RS03405 at 701.086 kb on + strand, within BWI76_RS03405 at 701.212 kb on - strand, within BWI76_RS03405 at 701.212 kb on - strand, within BWI76_RS03405 at 701.224 kb on + strand, within BWI76_RS03405 at 701.237 kb on - strand, within BWI76_RS03405 at 701.237 kb on - strand, within BWI76_RS03405 at 701.242 kb on - strand, within BWI76_RS03405 at 701.272 kb on + strand, within BWI76_RS03405 at 701.280 kb on - strand, within BWI76_RS03405 at 701.297 kb on + strand at 701.298 kb on - strand at 701.305 kb on - strand at 701.306 kb on - strand at 701.308 kb on + strand at 701.318 kb on + strand at 701.326 kb on - strand at 701.349 kb on - strand at 701.359 kb on - strand at 701.375 kb on + strand at 701.375 kb on + strand at 701.383 kb on - strand at 701.383 kb on - strand at 701.384 kb on - strand at 701.384 kb on - strand at 701.411 kb on + strand at 701.430 kb on + strand at 701.435 kb on + strand at 701.438 kb on - strand at 701.461 kb on - strand at 701.461 kb on - strand at 701.461 kb on - strand at 701.463 kb on + strand at 701.471 kb on - strand at 701.484 kb on - strand at 701.507 kb on + strand at 701.529 kb on + strand at 701.537 kb on - strand at 701.537 kb on - strand at 701.537 kb on - strand at 701.605 kb on - strand at 701.620 kb on + strand at 701.636 kb on + strand at 701.640 kb on + strand at 701.645 kb on + strand at 701.646 kb on + strand at 701.665 kb on + strand at 701.688 kb on - strand at 701.690 kb on + strand at 701.693 kb on - strand at 701.704 kb on - strand at 701.706 kb on + strand at 701.706 kb on + strand at 701.706 kb on + strand at 701.706 kb on + strand at 701.706 kb on + strand at 701.706 kb on + strand at 701.706 kb on + strand at 701.706 kb on + strand at 701.706 kb on + strand at 701.711 kb on + strand at 701.711 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.713 kb on + strand at 701.714 kb on - strand at 701.714 kb on - strand at 701.714 kb on - strand at 701.714 kb on - strand at 701.714 kb on - strand at 701.714 kb on - strand at 701.714 kb on - strand at 701.714 kb on - strand at 701.721 kb on - strand at 701.721 kb on - strand at 701.721 kb on - strand at 701.721 kb on - strand at 701.721 kb on - strand at 701.721 kb on - strand at 701.721 kb on - strand at 701.721 kb on - strand at 701.721 kb on - strand at 701.724 kb on - strand at 701.732 kb on - strand at 701.732 kb on - strand at 701.758 kb on + strand at 701.764 kb on - strand at 701.766 kb on - strand at 701.772 kb on - strand at 701.782 kb on + strand at 701.782 kb on + strand at 701.792 kb on + strand at 701.792 kb on + strand at 701.799 kb on - strand at 701.802 kb on - strand at 701.839 kb on + strand at 701.845 kb on - strand at 701.860 kb on + strand at 701.860 kb on + strand at 701.861 kb on + strand at 701.865 kb on + strand at 701.868 kb on - strand at 701.965 kb on - strand, within BWI76_RS03410 at 702.300 kb on + strand, within BWI76_RS03410 at 702.484 kb on + strand, within BWI76_RS03410 at 702.484 kb on + strand, within BWI76_RS03410 at 702.489 kb on + strand, within BWI76_RS03410 at 702.499 kb on + strand, within BWI76_RS03410 at 702.553 kb on + strand, within BWI76_RS03410 at 702.568 kb on - strand, within BWI76_RS03410 at 702.590 kb on + strand, within BWI76_RS03410 at 702.626 kb on - strand, within BWI76_RS03410 at 702.630 kb on + strand, within BWI76_RS03410 at 702.696 kb on + strand, within BWI76_RS03410 at 702.887 kb on + strand at 703.268 kb on - strand, within BWI76_RS03415 at 703.326 kb on - strand, within BWI76_RS03415 at 703.531 kb on - strand, within BWI76_RS03415 at 703.805 kb on + strand, within BWI76_RS03415
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL remove 700,844 + BWI76_RS03405 0.28 +0.8 700,887 + BWI76_RS03405 0.34 +0.9 700,900 - BWI76_RS03405 0.36 +1.4 700,929 - BWI76_RS03405 0.40 -0.3 701,005 - BWI76_RS03405 0.51 +0.2 701,042 + BWI76_RS03405 0.56 -0.3 701,086 + BWI76_RS03405 0.62 +0.2 701,212 - BWI76_RS03405 0.80 -0.9 701,212 - BWI76_RS03405 0.80 +0.7 701,224 + BWI76_RS03405 0.82 -1.2 701,237 - BWI76_RS03405 0.84 -1.4 701,237 - BWI76_RS03405 0.84 +0.4 701,242 - BWI76_RS03405 0.84 +0.1 701,272 + BWI76_RS03405 0.89 -0.0 701,280 - BWI76_RS03405 0.90 +1.0 701,297 + -0.2 701,298 - -1.4 701,305 - +0.4 701,306 - -0.1 701,308 + +0.4 701,318 + +0.1 701,326 - -0.6 701,349 - +0.1 701,359 - -0.7 701,375 + -1.1 701,375 + +0.1 701,383 - -1.6 701,383 - -0.1 701,384 - +0.2 701,384 - -0.6 701,411 + +1.9 701,430 + +2.4 701,435 + +1.1 701,438 - +2.4 701,461 - -0.2 701,461 - +0.5 701,461 - -0.2 701,463 + +0.5 701,471 - -1.4 701,484 - -1.8 701,507 + +3.0 701,529 + -0.6 701,537 - +1.4 701,537 - -3.9 701,537 - -1.0 701,605 - -0.4 701,620 + -1.8 701,636 + -0.8 701,640 + -3.7 701,645 + +0.5 701,646 + -1.5 701,665 + +0.6 701,688 - +0.5 701,690 + -0.6 701,693 - +0.4 701,704 - +0.2 701,706 + -0.4 701,706 + +0.8 701,706 + +1.2 701,706 + -1.0 701,706 + +0.8 701,706 + -1.6 701,706 + +0.1 701,706 + -0.7 701,706 + +0.8 701,711 + -1.0 701,711 + +1.4 701,713 + +2.6 701,713 + +1.6 701,713 + +0.8 701,713 + +0.5 701,713 + -2.5 701,713 + -0.4 701,713 + +0.2 701,713 + +0.2 701,713 + -0.5 701,713 + -0.3 701,713 + -0.0 701,713 + +0.1 701,713 + +0.4 701,713 + -1.7 701,714 - +0.0 701,714 - -2.0 701,714 - -3.0 701,714 - -1.0 701,714 - +1.4 701,714 - +1.4 701,714 - +1.4 701,714 - +0.5 701,721 - -1.4 701,721 - -1.2 701,721 - -0.2 701,721 - -0.2 701,721 - -0.3 701,721 - -0.1 701,721 - +2.0 701,721 - +0.6 701,721 - -0.1 701,724 - -2.2 701,732 - +1.4 701,732 - +1.0 701,758 + +0.3 701,764 - -0.2 701,766 - -0.6 701,772 - +1.0 701,782 + +0.4 701,782 + +1.4 701,792 + -0.5 701,792 + -0.5 701,799 - +0.1 701,802 - -0.5 701,839 + -1.2 701,845 - +0.2 701,860 + -0.0 701,860 + -0.9 701,861 + -1.0 701,865 + +0.5 701,868 - -0.5 701,965 - BWI76_RS03410 0.14 -2.2 702,300 + BWI76_RS03410 0.46 -0.9 702,484 + BWI76_RS03410 0.64 -0.1 702,484 + BWI76_RS03410 0.64 +0.1 702,489 + BWI76_RS03410 0.64 +0.4 702,499 + BWI76_RS03410 0.65 -0.5 702,553 + BWI76_RS03410 0.71 +0.7 702,568 - BWI76_RS03410 0.72 -0.2 702,590 + BWI76_RS03410 0.74 +0.4 702,626 - BWI76_RS03410 0.78 -1.3 702,630 + BWI76_RS03410 0.78 -2.0 702,696 + BWI76_RS03410 0.84 -0.6 702,887 + +0.5 703,268 - BWI76_RS03415 0.21 +0.0 703,326 - BWI76_RS03415 0.27 -2.3 703,531 - BWI76_RS03415 0.47 +0.0 703,805 + BWI76_RS03415 0.73 -0.1
Or see this region's nucleotide sequence