Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02710 and BWI76_RS02715 are separated by 75 nucleotides BWI76_RS02715 and BWI76_RS02720 are separated by 80 nucleotides BWI76_RS02720 and BWI76_RS02725 are separated by 84 nucleotides BWI76_RS02725 and BWI76_RS02730 are separated by 52 nucleotides
BWI76_RS02710: BWI76_RS02710 - EamA family transporter, at 549,134 to 550,105
_RS02710
BWI76_RS02715: BWI76_RS02715 - putative helix-turn-helix AraC-type transcriptional regulator, at 550,181 to 551,005
_RS02715
BWI76_RS02720: BWI76_RS02720 - NAD(P)-dependent oxidoreductase, at 551,086 to 551,934
_RS02720
BWI76_RS02725: BWI76_RS02725 - HxlR family transcriptional regulator, at 552,019 to 552,402
_RS02725
BWI76_RS02730: BWI76_RS02730 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 552,455 to 554,398
_RS02730
Position (kb) 551
552 Strain fitness (log2 ratio) -1
0
1
2
3 at 550.138 kb on + strand at 550.138 kb on + strand at 550.224 kb on - strand at 550.235 kb on + strand at 550.247 kb on + strand at 550.255 kb on - strand at 550.255 kb on - strand at 550.521 kb on - strand, within BWI76_RS02715 at 550.654 kb on + strand, within BWI76_RS02715 at 550.761 kb on + strand, within BWI76_RS02715 at 550.789 kb on + strand, within BWI76_RS02715 at 550.818 kb on - strand, within BWI76_RS02715 at 550.881 kb on - strand, within BWI76_RS02715 at 550.896 kb on - strand, within BWI76_RS02715 at 550.896 kb on - strand, within BWI76_RS02715 at 550.985 kb on - strand at 551.229 kb on + strand, within BWI76_RS02720 at 551.237 kb on - strand, within BWI76_RS02720 at 551.237 kb on - strand, within BWI76_RS02720 at 551.318 kb on - strand, within BWI76_RS02720 at 551.341 kb on - strand, within BWI76_RS02720 at 551.543 kb on - strand, within BWI76_RS02720 at 551.604 kb on - strand, within BWI76_RS02720 at 551.666 kb on + strand, within BWI76_RS02720 at 551.854 kb on - strand at 551.901 kb on - strand at 551.937 kb on + strand at 552.264 kb on - strand, within BWI76_RS02725 at 552.409 kb on + strand at 552.437 kb on - strand at 552.688 kb on + strand, within BWI76_RS02730
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL remove 550,138 + +0.1 550,138 + +0.1 550,224 - +0.3 550,235 + -0.2 550,247 + +1.0 550,255 - +0.5 550,255 - -0.1 550,521 - BWI76_RS02715 0.41 +0.4 550,654 + BWI76_RS02715 0.57 -0.1 550,761 + BWI76_RS02715 0.70 +0.4 550,789 + BWI76_RS02715 0.74 -0.4 550,818 - BWI76_RS02715 0.77 -1.2 550,881 - BWI76_RS02715 0.85 -0.2 550,896 - BWI76_RS02715 0.87 -1.3 550,896 - BWI76_RS02715 0.87 -0.8 550,985 - +0.6 551,229 + BWI76_RS02720 0.17 +1.6 551,237 - BWI76_RS02720 0.18 -0.9 551,237 - BWI76_RS02720 0.18 -0.5 551,318 - BWI76_RS02720 0.27 +1.1 551,341 - BWI76_RS02720 0.30 +0.3 551,543 - BWI76_RS02720 0.54 +1.4 551,604 - BWI76_RS02720 0.61 +0.6 551,666 + BWI76_RS02720 0.68 +0.9 551,854 - +0.4 551,901 - +0.5 551,937 + -1.3 552,264 - BWI76_RS02725 0.64 +0.9 552,409 + +1.5 552,437 - +0.2 552,688 + BWI76_RS02730 0.12 +3.5
Or see this region's nucleotide sequence