Experiment: MoLS4 with Pyruvate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2357 and DORF41147 are separated by 40 nucleotides DORF41147 and DVU2359 are separated by 377 nucleotides
DVU2357: DVU2357 - HD domain protein (TIGR), at 2,455,000 to 2,456,109
DVU2357
DORF41147: DORF41147 - no description, at 2,456,150 to 2,456,278
DORF41147
DVU2359: DVU2359 - sigma-54 dependent transcriptional regulator (TIGR), at 2,456,656 to 2,458,311
DVU2359
Position (kb)
2456
2457 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2455.403 kb on + strand, within DVU2357 at 2455.403 kb on + strand, within DVU2357 at 2455.534 kb on + strand, within DVU2357 at 2455.570 kb on + strand, within DVU2357 at 2455.637 kb on + strand, within DVU2357 at 2455.667 kb on - strand, within DVU2357 at 2455.682 kb on + strand, within DVU2357 at 2455.922 kb on - strand, within DVU2357 at 2456.065 kb on + strand at 2456.073 kb on - strand at 2456.103 kb on + strand at 2456.111 kb on - strand at 2456.128 kb on - strand at 2456.258 kb on + strand, within DORF41147 at 2456.266 kb on - strand at 2456.324 kb on + strand at 2456.324 kb on + strand at 2456.353 kb on - strand at 2456.380 kb on - strand at 2456.411 kb on - strand at 2456.736 kb on + strand at 2456.741 kb on - strand at 2456.744 kb on - strand at 2456.746 kb on + strand at 2456.754 kb on - strand at 2456.798 kb on - strand at 2456.806 kb on + strand at 2456.814 kb on - strand at 2456.877 kb on + strand, within DVU2359 at 2456.951 kb on + strand, within DVU2359 at 2456.998 kb on + strand, within DVU2359 at 2457.095 kb on - strand, within DVU2359 at 2457.179 kb on - strand, within DVU2359
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Pyruvate 10mM remove 2,455,403 + DVU2357 0.36 -0.0 2,455,403 + DVU2357 0.36 +0.0 2,455,534 + DVU2357 0.48 +0.0 2,455,570 + DVU2357 0.51 -1.8 2,455,637 + DVU2357 0.57 -1.1 2,455,667 - DVU2357 0.60 -1.0 2,455,682 + DVU2357 0.61 -0.9 2,455,922 - DVU2357 0.83 -0.7 2,456,065 + +0.0 2,456,073 - +0.7 2,456,103 + +0.7 2,456,111 - -0.2 2,456,128 - -1.3 2,456,258 + DORF41147 0.84 -1.5 2,456,266 - +1.6 2,456,324 + +0.4 2,456,324 + +0.0 2,456,353 - -0.5 2,456,380 - -0.7 2,456,411 - -1.4 2,456,736 + +0.2 2,456,741 - -0.8 2,456,744 - -0.2 2,456,746 + -0.9 2,456,754 - +1.8 2,456,798 - -1.0 2,456,806 + -0.1 2,456,814 - +0.3 2,456,877 + DVU2359 0.13 +0.0 2,456,951 + DVU2359 0.18 -0.8 2,456,998 + DVU2359 0.21 -1.9 2,457,095 - DVU2359 0.27 +0.8 2,457,179 - DVU2359 0.32 +0.2
Or see this region's nucleotide sequence