Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13535 and BWI76_RS13540 are separated by 15 nucleotides BWI76_RS13540 and BWI76_RS13545 are separated by 11 nucleotides BWI76_RS13545 and BWI76_RS13550 are separated by 9 nucleotides
BWI76_RS13535: BWI76_RS13535 - LLM class flavin-dependent oxidoreductase, at 2,822,196 to 2,823,512
_RS13535
BWI76_RS13540: BWI76_RS13540 - ABC transporter substrate-binding protein, at 2,823,528 to 2,824,469
_RS13540
BWI76_RS13545: BWI76_RS13545 - N-acetyltransferase, at 2,824,481 to 2,824,990
_RS13545
BWI76_RS13550: BWI76_RS13550 - polar amino acid ABC transporter inner membrane subunit, at 2,825,000 to 2,825,926
_RS13550
Position (kb)
2823
2824
2825 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2822.538 kb on + strand, within BWI76_RS13535 at 2822.567 kb on - strand, within BWI76_RS13535 at 2822.567 kb on - strand, within BWI76_RS13535 at 2822.568 kb on + strand, within BWI76_RS13535 at 2822.583 kb on - strand, within BWI76_RS13535 at 2822.591 kb on - strand, within BWI76_RS13535 at 2822.595 kb on + strand, within BWI76_RS13535 at 2822.595 kb on + strand, within BWI76_RS13535 at 2822.616 kb on + strand, within BWI76_RS13535 at 2822.624 kb on + strand at 2822.626 kb on + strand, within BWI76_RS13535 at 2822.626 kb on + strand, within BWI76_RS13535 at 2822.626 kb on + strand, within BWI76_RS13535 at 2822.634 kb on - strand, within BWI76_RS13535 at 2822.636 kb on + strand, within BWI76_RS13535 at 2822.644 kb on - strand, within BWI76_RS13535 at 2822.670 kb on + strand, within BWI76_RS13535 at 2822.670 kb on + strand, within BWI76_RS13535 at 2822.670 kb on + strand, within BWI76_RS13535 at 2822.670 kb on + strand, within BWI76_RS13535 at 2822.670 kb on + strand, within BWI76_RS13535 at 2822.670 kb on + strand, within BWI76_RS13535 at 2822.676 kb on + strand, within BWI76_RS13535 at 2822.677 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.679 kb on - strand, within BWI76_RS13535 at 2822.679 kb on - strand, within BWI76_RS13535 at 2822.681 kb on + strand, within BWI76_RS13535 at 2822.684 kb on + strand, within BWI76_RS13535 at 2822.689 kb on + strand, within BWI76_RS13535 at 2822.689 kb on + strand, within BWI76_RS13535 at 2822.689 kb on + strand, within BWI76_RS13535 at 2822.697 kb on - strand, within BWI76_RS13535 at 2822.723 kb on - strand, within BWI76_RS13535 at 2822.727 kb on + strand at 2822.735 kb on - strand, within BWI76_RS13535 at 2822.766 kb on - strand, within BWI76_RS13535 at 2822.817 kb on + strand, within BWI76_RS13535 at 2822.825 kb on - strand, within BWI76_RS13535 at 2822.825 kb on - strand, within BWI76_RS13535 at 2822.888 kb on - strand, within BWI76_RS13535 at 2822.895 kb on + strand, within BWI76_RS13535 at 2822.946 kb on + strand, within BWI76_RS13535 at 2822.971 kb on + strand, within BWI76_RS13535 at 2823.018 kb on - strand, within BWI76_RS13535 at 2823.018 kb on - strand, within BWI76_RS13535 at 2823.045 kb on - strand, within BWI76_RS13535 at 2823.059 kb on - strand, within BWI76_RS13535 at 2823.100 kb on - strand, within BWI76_RS13535 at 2823.182 kb on - strand, within BWI76_RS13535 at 2823.232 kb on + strand, within BWI76_RS13535 at 2823.333 kb on - strand, within BWI76_RS13535 at 2823.333 kb on - strand, within BWI76_RS13535 at 2823.414 kb on - strand at 2823.420 kb on - strand at 2823.469 kb on + strand at 2823.477 kb on - strand at 2823.477 kb on - strand at 2823.477 kb on - strand at 2823.477 kb on - strand at 2823.515 kb on - strand at 2823.781 kb on + strand, within BWI76_RS13540 at 2823.832 kb on + strand, within BWI76_RS13540 at 2823.881 kb on + strand, within BWI76_RS13540 at 2824.032 kb on + strand, within BWI76_RS13540 at 2824.100 kb on - strand, within BWI76_RS13540 at 2824.167 kb on + strand, within BWI76_RS13540 at 2824.175 kb on - strand, within BWI76_RS13540 at 2824.910 kb on + strand, within BWI76_RS13545 at 2825.210 kb on + strand, within BWI76_RS13550
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 2,822,538 + BWI76_RS13535 0.26 -1.6 2,822,567 - BWI76_RS13535 0.28 -0.0 2,822,567 - BWI76_RS13535 0.28 -0.3 2,822,568 + BWI76_RS13535 0.28 +0.6 2,822,583 - BWI76_RS13535 0.29 -0.1 2,822,591 - BWI76_RS13535 0.30 +0.2 2,822,595 + BWI76_RS13535 0.30 -0.7 2,822,595 + BWI76_RS13535 0.30 +0.2 2,822,616 + BWI76_RS13535 0.32 -0.2 2,822,624 + +0.3 2,822,626 + BWI76_RS13535 0.33 +0.7 2,822,626 + BWI76_RS13535 0.33 -1.3 2,822,626 + BWI76_RS13535 0.33 -0.5 2,822,634 - BWI76_RS13535 0.33 +0.1 2,822,636 + BWI76_RS13535 0.33 +0.6 2,822,644 - BWI76_RS13535 0.34 +0.8 2,822,670 + BWI76_RS13535 0.36 -0.2 2,822,670 + BWI76_RS13535 0.36 -0.8 2,822,670 + BWI76_RS13535 0.36 -0.3 2,822,670 + BWI76_RS13535 0.36 -0.1 2,822,670 + BWI76_RS13535 0.36 -0.3 2,822,670 + BWI76_RS13535 0.36 -1.3 2,822,676 + BWI76_RS13535 0.36 +0.5 2,822,677 - BWI76_RS13535 0.37 -0.8 2,822,678 - BWI76_RS13535 0.37 -0.3 2,822,678 - BWI76_RS13535 0.37 +0.7 2,822,678 - BWI76_RS13535 0.37 -0.9 2,822,678 - BWI76_RS13535 0.37 +0.3 2,822,678 - BWI76_RS13535 0.37 +0.1 2,822,678 - BWI76_RS13535 0.37 -0.2 2,822,678 - BWI76_RS13535 0.37 -0.1 2,822,678 - BWI76_RS13535 0.37 -0.2 2,822,678 - BWI76_RS13535 0.37 -0.6 2,822,679 - BWI76_RS13535 0.37 +1.0 2,822,679 - BWI76_RS13535 0.37 -0.8 2,822,681 + BWI76_RS13535 0.37 -0.5 2,822,684 + BWI76_RS13535 0.37 -0.9 2,822,689 + BWI76_RS13535 0.37 +0.2 2,822,689 + BWI76_RS13535 0.37 -0.1 2,822,689 + BWI76_RS13535 0.37 +0.5 2,822,697 - BWI76_RS13535 0.38 -2.3 2,822,723 - BWI76_RS13535 0.40 +0.2 2,822,727 + -2.1 2,822,735 - BWI76_RS13535 0.41 -0.6 2,822,766 - BWI76_RS13535 0.43 -0.1 2,822,817 + BWI76_RS13535 0.47 +0.5 2,822,825 - BWI76_RS13535 0.48 -1.0 2,822,825 - BWI76_RS13535 0.48 -0.1 2,822,888 - BWI76_RS13535 0.53 -0.6 2,822,895 + BWI76_RS13535 0.53 -0.4 2,822,946 + BWI76_RS13535 0.57 +0.3 2,822,971 + BWI76_RS13535 0.59 +0.4 2,823,018 - BWI76_RS13535 0.62 +0.7 2,823,018 - BWI76_RS13535 0.62 -1.3 2,823,045 - BWI76_RS13535 0.64 +0.9 2,823,059 - BWI76_RS13535 0.66 +0.3 2,823,100 - BWI76_RS13535 0.69 -0.7 2,823,182 - BWI76_RS13535 0.75 +1.9 2,823,232 + BWI76_RS13535 0.79 -1.8 2,823,333 - BWI76_RS13535 0.86 +0.6 2,823,333 - BWI76_RS13535 0.86 -2.3 2,823,414 - -0.2 2,823,420 - +1.2 2,823,469 + +0.5 2,823,477 - -0.2 2,823,477 - -0.7 2,823,477 - -0.2 2,823,477 - +0.2 2,823,515 - +0.2 2,823,781 + BWI76_RS13540 0.27 +0.5 2,823,832 + BWI76_RS13540 0.32 -0.2 2,823,881 + BWI76_RS13540 0.37 -0.1 2,824,032 + BWI76_RS13540 0.54 +2.4 2,824,100 - BWI76_RS13540 0.61 +1.6 2,824,167 + BWI76_RS13540 0.68 +0.5 2,824,175 - BWI76_RS13540 0.69 +0.9 2,824,910 + BWI76_RS13545 0.84 -0.3 2,825,210 + BWI76_RS13550 0.23 +0.6
Or see this region's nucleotide sequence