Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07100 and BWI76_RS07105 are separated by 340 nucleotides BWI76_RS07105 and BWI76_RS07110 are separated by 363 nucleotides
BWI76_RS07100: BWI76_RS07100 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 1,491,787 to 1,492,653
_RS07100
BWI76_RS07105: BWI76_RS07105 - tRNA-Arg, at 1,492,994 to 1,493,070
_RS07105
BWI76_RS07110: BWI76_RS07110 - DNA-binding protein, at 1,493,434 to 1,493,891
_RS07110
Position (kb) 1492
1493
1494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1492.770 kb on - strand at 1492.905 kb on - strand at 1492.951 kb on + strand at 1493.095 kb on - strand at 1493.099 kb on + strand at 1493.145 kb on - strand at 1493.152 kb on + strand at 1493.157 kb on + strand at 1493.157 kb on + strand at 1493.157 kb on + strand at 1493.157 kb on + strand at 1493.157 kb on + strand at 1493.157 kb on + strand at 1493.157 kb on + strand at 1493.159 kb on - strand at 1493.162 kb on + strand at 1493.165 kb on - strand at 1493.165 kb on - strand at 1493.165 kb on - strand at 1493.165 kb on - strand at 1493.165 kb on - strand at 1493.167 kb on + strand at 1493.167 kb on + strand at 1493.167 kb on + strand at 1493.167 kb on + strand at 1493.172 kb on + strand at 1493.175 kb on - strand at 1493.175 kb on - strand at 1493.175 kb on - strand at 1493.175 kb on - strand at 1493.177 kb on + strand at 1493.177 kb on + strand at 1493.180 kb on + strand at 1493.185 kb on - strand at 1493.185 kb on - strand at 1493.187 kb on - strand at 1493.187 kb on - strand at 1493.187 kb on - strand at 1493.188 kb on - strand at 1493.194 kb on - strand at 1493.194 kb on - strand at 1493.215 kb on + strand at 1493.216 kb on - strand at 1493.223 kb on - strand at 1493.225 kb on + strand at 1493.230 kb on - strand at 1493.231 kb on + strand at 1493.233 kb on - strand at 1493.239 kb on - strand at 1493.240 kb on - strand at 1493.295 kb on - strand at 1493.314 kb on + strand at 1493.319 kb on + strand at 1493.321 kb on + strand at 1493.322 kb on - strand at 1493.322 kb on - strand at 1493.327 kb on + strand at 1493.328 kb on + strand at 1493.328 kb on + strand at 1493.328 kb on + strand at 1493.328 kb on + strand at 1493.328 kb on + strand at 1493.328 kb on + strand at 1493.328 kb on + strand at 1493.329 kb on - strand at 1493.329 kb on - strand at 1493.329 kb on - strand at 1493.329 kb on - strand at 1493.329 kb on - strand at 1493.336 kb on - strand at 1493.336 kb on - strand at 1493.336 kb on - strand at 1493.336 kb on - strand at 1493.336 kb on - strand at 1493.336 kb on - strand at 1493.336 kb on - strand at 1493.338 kb on + strand at 1493.436 kb on + strand at 1493.454 kb on - strand at 1493.516 kb on + strand, within BWI76_RS07110 at 1493.576 kb on - strand, within BWI76_RS07110 at 1493.659 kb on - strand, within BWI76_RS07110 at 1493.668 kb on - strand, within BWI76_RS07110 at 1493.669 kb on - strand, within BWI76_RS07110 at 1493.697 kb on + strand, within BWI76_RS07110 at 1493.697 kb on + strand, within BWI76_RS07110 at 1493.697 kb on + strand, within BWI76_RS07110 at 1493.697 kb on + strand, within BWI76_RS07110 at 1493.697 kb on + strand, within BWI76_RS07110 at 1493.697 kb on + strand, within BWI76_RS07110 at 1493.733 kb on + strand, within BWI76_RS07110 at 1493.761 kb on + strand, within BWI76_RS07110 at 1493.939 kb on - strand at 1493.985 kb on - strand at 1493.991 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 1,492,770 - -0.2 1,492,905 - -0.8 1,492,951 + -0.2 1,493,095 - -1.1 1,493,099 + +0.2 1,493,145 - +1.3 1,493,152 + +1.9 1,493,157 + -1.1 1,493,157 + +0.9 1,493,157 + -0.3 1,493,157 + -2.3 1,493,157 + -0.7 1,493,157 + +1.7 1,493,157 + -0.4 1,493,159 - -0.3 1,493,162 + +0.5 1,493,165 - -0.1 1,493,165 - -1.5 1,493,165 - -1.1 1,493,165 - +0.9 1,493,165 - +0.2 1,493,167 + -2.0 1,493,167 + -0.1 1,493,167 + -0.8 1,493,167 + -0.1 1,493,172 + +1.5 1,493,175 - +1.9 1,493,175 - -0.7 1,493,175 - -0.0 1,493,175 - +0.9 1,493,177 + +1.1 1,493,177 + -1.4 1,493,180 + +1.7 1,493,185 - -0.1 1,493,185 - -1.5 1,493,187 - +0.4 1,493,187 - -0.8 1,493,187 - -0.1 1,493,188 - -0.1 1,493,194 - -0.7 1,493,194 - -1.9 1,493,215 + -0.0 1,493,216 - +0.9 1,493,223 - -2.6 1,493,225 + -1.4 1,493,230 - -0.1 1,493,231 + +0.9 1,493,233 - +1.0 1,493,239 - -0.7 1,493,240 - -2.2 1,493,295 - -0.2 1,493,314 + -1.7 1,493,319 + -0.7 1,493,321 + -1.4 1,493,322 - -1.1 1,493,322 - +0.9 1,493,327 + -1.1 1,493,328 + -0.7 1,493,328 + +0.9 1,493,328 + +0.7 1,493,328 + +0.8 1,493,328 + -1.4 1,493,328 + -1.9 1,493,328 + -0.1 1,493,329 - +0.3 1,493,329 - -1.7 1,493,329 - -0.7 1,493,329 - -1.8 1,493,329 - -1.1 1,493,336 - +0.6 1,493,336 - -0.2 1,493,336 - +0.9 1,493,336 - -0.1 1,493,336 - +0.6 1,493,336 - -0.6 1,493,336 - -0.3 1,493,338 + +0.9 1,493,436 + +0.3 1,493,454 - -0.7 1,493,516 + BWI76_RS07110 0.18 -1.4 1,493,576 - BWI76_RS07110 0.31 -0.1 1,493,659 - BWI76_RS07110 0.49 -0.1 1,493,668 - BWI76_RS07110 0.51 -1.9 1,493,669 - BWI76_RS07110 0.51 -0.7 1,493,697 + BWI76_RS07110 0.57 -0.8 1,493,697 + BWI76_RS07110 0.57 +0.9 1,493,697 + BWI76_RS07110 0.57 -1.4 1,493,697 + BWI76_RS07110 0.57 -0.1 1,493,697 + BWI76_RS07110 0.57 -0.4 1,493,697 + BWI76_RS07110 0.57 -2.6 1,493,733 + BWI76_RS07110 0.65 -1.2 1,493,761 + BWI76_RS07110 0.71 +1.1 1,493,939 - -1.7 1,493,985 - -0.7 1,493,991 - +0.9
Or see this region's nucleotide sequence