Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06420

Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06415 and BWI76_RS06420 are separated by 155 nucleotidesBWI76_RS06420 and BWI76_RS06425 are separated by 92 nucleotides BWI76_RS06415: BWI76_RS06415 - MFS transporter, at 1,347,551 to 1,348,915 _RS06415 BWI76_RS06420: BWI76_RS06420 - oxidoreductase, at 1,349,071 to 1,350,249 _RS06420 BWI76_RS06425: BWI76_RS06425 - MFS transporter, at 1,350,342 to 1,351,742 _RS06425 Position (kb) 1349 1350 1351Strain fitness (log2 ratio) -3 -2 -1 0 1at 1348.581 kb on - strand, within BWI76_RS06415at 1348.583 kb on - strand, within BWI76_RS06415at 1348.731 kb on + strand, within BWI76_RS06415at 1348.787 kb on + strandat 1348.787 kb on + strandat 1348.795 kb on - strandat 1348.952 kb on - strandat 1349.054 kb on + strandat 1349.062 kb on - strandat 1349.127 kb on + strandat 1349.364 kb on - strand, within BWI76_RS06420at 1349.387 kb on - strand, within BWI76_RS06420at 1349.455 kb on + strand, within BWI76_RS06420at 1349.463 kb on - strand, within BWI76_RS06420at 1349.497 kb on + strand, within BWI76_RS06420at 1349.511 kb on + strand, within BWI76_RS06420at 1349.638 kb on + strand, within BWI76_RS06420at 1350.060 kb on - strand, within BWI76_RS06420at 1350.194 kb on + strandat 1350.223 kb on + strandat 1350.223 kb on + strandat 1350.367 kb on - strandat 1350.578 kb on - strand, within BWI76_RS06425at 1350.686 kb on - strand, within BWI76_RS06425at 1350.809 kb on + strand, within BWI76_RS06425at 1350.817 kb on - strand, within BWI76_RS06425at 1350.995 kb on - strand, within BWI76_RS06425at 1351.164 kb on - strand, within BWI76_RS06425at 1351.189 kb on + strand, within BWI76_RS06425

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
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1,348,581 - BWI76_RS06415 0.75 +1.0
1,348,583 - BWI76_RS06415 0.76 -1.5
1,348,731 + BWI76_RS06415 0.86 -0.0
1,348,787 + +0.4
1,348,787 + -3.3
1,348,795 - -0.1
1,348,952 - +0.2
1,349,054 + +0.3
1,349,062 - +0.6
1,349,127 + +0.1
1,349,364 - BWI76_RS06420 0.25 +0.4
1,349,387 - BWI76_RS06420 0.27 +0.6
1,349,455 + BWI76_RS06420 0.33 +0.8
1,349,463 - BWI76_RS06420 0.33 +0.3
1,349,497 + BWI76_RS06420 0.36 +1.2
1,349,511 + BWI76_RS06420 0.37 +1.6
1,349,638 + BWI76_RS06420 0.48 -1.0
1,350,060 - BWI76_RS06420 0.84 -0.1
1,350,194 + +0.2
1,350,223 + +0.4
1,350,223 + +0.2
1,350,367 - +0.2
1,350,578 - BWI76_RS06425 0.17 -1.5
1,350,686 - BWI76_RS06425 0.25 +0.2
1,350,809 + BWI76_RS06425 0.33 +0.2
1,350,817 - BWI76_RS06425 0.34 -1.2
1,350,995 - BWI76_RS06425 0.47 +0.7
1,351,164 - BWI76_RS06425 0.59 -0.0
1,351,189 + BWI76_RS06425 0.60 +0.9

Or see this region's nucleotide sequence