Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27475

Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27470 and BWI76_RS27475 are separated by 98 nucleotidesBWI76_RS27475 and BWI76_RS27480 are separated by 62 nucleotides BWI76_RS27470: BWI76_RS27470 - sodium:sulfate symporter family protein, at 5,698,878 to 5,700,182 _RS27470 BWI76_RS27475: BWI76_RS27475 - regulatory protein GntR family protein, at 5,700,281 to 5,701,003 _RS27475 BWI76_RS27480: BWI76_RS27480 - hypothetical protein, at 5,701,066 to 5,702,106 _RS27480 Position (kb) 5700 5701 5702Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5699.407 kb on + strand, within BWI76_RS27470at 5699.425 kb on - strand, within BWI76_RS27470at 5699.425 kb on - strand, within BWI76_RS27470at 5699.566 kb on - strand, within BWI76_RS27470at 5699.568 kb on + strand, within BWI76_RS27470at 5699.581 kb on + strand, within BWI76_RS27470at 5699.617 kb on + strand, within BWI76_RS27470at 5699.853 kb on + strand, within BWI76_RS27470at 5699.853 kb on + strand, within BWI76_RS27470at 5699.866 kb on - strand, within BWI76_RS27470at 5699.938 kb on - strand, within BWI76_RS27470at 5700.093 kb on - strandat 5700.112 kb on + strandat 5700.153 kb on + strandat 5700.228 kb on + strandat 5700.279 kb on + strandat 5700.287 kb on - strandat 5700.342 kb on - strandat 5700.347 kb on + strandat 5700.424 kb on + strand, within BWI76_RS27475at 5700.424 kb on + strand, within BWI76_RS27475at 5700.424 kb on + strand, within BWI76_RS27475at 5700.424 kb on + strand, within BWI76_RS27475at 5700.424 kb on + strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.435 kb on + strand, within BWI76_RS27475at 5700.435 kb on + strand, within BWI76_RS27475at 5700.479 kb on + strand, within BWI76_RS27475at 5700.514 kb on + strand, within BWI76_RS27475at 5700.514 kb on + strand, within BWI76_RS27475at 5700.514 kb on + strand, within BWI76_RS27475at 5700.514 kb on + strand, within BWI76_RS27475at 5700.522 kb on - strand, within BWI76_RS27475at 5700.522 kb on - strand, within BWI76_RS27475at 5700.527 kb on - strand, within BWI76_RS27475at 5700.637 kb on + strand, within BWI76_RS27475at 5700.645 kb on - strand, within BWI76_RS27475at 5700.780 kb on - strand, within BWI76_RS27475at 5700.827 kb on + strand, within BWI76_RS27475at 5700.835 kb on - strand, within BWI76_RS27475at 5700.837 kb on + strand, within BWI76_RS27475at 5700.877 kb on - strand, within BWI76_RS27475at 5700.976 kb on + strandat 5701.012 kb on + strandat 5701.012 kb on + strandat 5701.012 kb on + strandat 5701.020 kb on - strandat 5701.020 kb on - strandat 5701.020 kb on - strandat 5701.020 kb on - strandat 5701.045 kb on + strandat 5701.055 kb on + strandat 5701.089 kb on + strandat 5701.191 kb on - strand, within BWI76_RS27480at 5701.270 kb on - strand, within BWI76_RS27480at 5701.270 kb on - strand, within BWI76_RS27480at 5701.272 kb on + strand, within BWI76_RS27480at 5701.272 kb on + strand, within BWI76_RS27480at 5701.272 kb on + strand, within BWI76_RS27480at 5701.272 kb on + strand, within BWI76_RS27480at 5701.272 kb on + strand, within BWI76_RS27480at 5701.272 kb on + strand, within BWI76_RS27480at 5701.272 kb on + strand, within BWI76_RS27480at 5701.272 kb on + strand, within BWI76_RS27480at 5701.280 kb on - strand, within BWI76_RS27480at 5701.280 kb on - strand, within BWI76_RS27480at 5701.280 kb on - strand, within BWI76_RS27480at 5701.281 kb on - strand, within BWI76_RS27480at 5701.292 kb on + strand, within BWI76_RS27480at 5701.308 kb on + strand, within BWI76_RS27480at 5701.308 kb on - strand, within BWI76_RS27480at 5701.346 kb on - strand, within BWI76_RS27480at 5701.371 kb on - strand, within BWI76_RS27480at 5701.474 kb on - strand, within BWI76_RS27480at 5701.494 kb on + strand, within BWI76_RS27480at 5701.542 kb on - strand, within BWI76_RS27480at 5701.684 kb on - strand, within BWI76_RS27480at 5701.745 kb on - strand, within BWI76_RS27480at 5701.814 kb on + strand, within BWI76_RS27480at 5701.856 kb on + strand, within BWI76_RS27480at 5701.864 kb on - strand, within BWI76_RS27480at 5701.876 kb on + strandat 5701.897 kb on - strandat 5701.908 kb on + strand, within BWI76_RS27480at 5701.955 kb on - strand, within BWI76_RS27480at 5701.978 kb on + strand, within BWI76_RS27480at 5701.979 kb on + strand, within BWI76_RS27480at 5701.986 kb on - strand, within BWI76_RS27480

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
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5,699,407 + BWI76_RS27470 0.41 -0.3
5,699,425 - BWI76_RS27470 0.42 +0.1
5,699,425 - BWI76_RS27470 0.42 -0.3
5,699,566 - BWI76_RS27470 0.53 -0.5
5,699,568 + BWI76_RS27470 0.53 -0.2
5,699,581 + BWI76_RS27470 0.54 -0.9
5,699,617 + BWI76_RS27470 0.57 -0.5
5,699,853 + BWI76_RS27470 0.75 -0.8
5,699,853 + BWI76_RS27470 0.75 +0.1
5,699,866 - BWI76_RS27470 0.76 -0.5
5,699,938 - BWI76_RS27470 0.81 +0.3
5,700,093 - -2.1
5,700,112 + -0.2
5,700,153 + +0.7
5,700,228 + +0.3
5,700,279 + -0.4
5,700,287 - -0.4
5,700,342 - -0.2
5,700,347 + -0.1
5,700,424 + BWI76_RS27475 0.20 -0.5
5,700,424 + BWI76_RS27475 0.20 +2.3
5,700,424 + BWI76_RS27475 0.20 -0.5
5,700,424 + BWI76_RS27475 0.20 -1.3
5,700,424 + BWI76_RS27475 0.20 -1.0
5,700,432 - BWI76_RS27475 0.21 -2.1
5,700,432 - BWI76_RS27475 0.21 -0.7
5,700,432 - BWI76_RS27475 0.21 -0.1
5,700,432 - BWI76_RS27475 0.21 -0.4
5,700,432 - BWI76_RS27475 0.21 -1.0
5,700,432 - BWI76_RS27475 0.21 -0.5
5,700,432 - BWI76_RS27475 0.21 -1.2
5,700,432 - BWI76_RS27475 0.21 -1.3
5,700,435 + BWI76_RS27475 0.21 -0.5
5,700,435 + BWI76_RS27475 0.21 -1.1
5,700,479 + BWI76_RS27475 0.27 -1.5
5,700,514 + BWI76_RS27475 0.32 -1.9
5,700,514 + BWI76_RS27475 0.32 -1.1
5,700,514 + BWI76_RS27475 0.32 +1.1
5,700,514 + BWI76_RS27475 0.32 -0.5
5,700,522 - BWI76_RS27475 0.33 -1.1
5,700,522 - BWI76_RS27475 0.33 -1.4
5,700,527 - BWI76_RS27475 0.34 -0.8
5,700,637 + BWI76_RS27475 0.49 +0.8
5,700,645 - BWI76_RS27475 0.50 -1.1
5,700,780 - BWI76_RS27475 0.69 +0.1
5,700,827 + BWI76_RS27475 0.76 -0.8
5,700,835 - BWI76_RS27475 0.77 -0.0
5,700,837 + BWI76_RS27475 0.77 -1.1
5,700,877 - BWI76_RS27475 0.82 -1.1
5,700,976 + +1.1
5,701,012 + -1.4
5,701,012 + +1.1
5,701,012 + +0.1
5,701,020 - +0.0
5,701,020 - -0.3
5,701,020 - -0.3
5,701,020 - -0.4
5,701,045 + +0.1
5,701,055 + +0.1
5,701,089 + -1.9
5,701,191 - BWI76_RS27480 0.12 -0.0
5,701,270 - BWI76_RS27480 0.20 +0.2
5,701,270 - BWI76_RS27480 0.20 +1.3
5,701,272 + BWI76_RS27480 0.20 +0.0
5,701,272 + BWI76_RS27480 0.20 +0.1
5,701,272 + BWI76_RS27480 0.20 -0.4
5,701,272 + BWI76_RS27480 0.20 -0.5
5,701,272 + BWI76_RS27480 0.20 -0.4
5,701,272 + BWI76_RS27480 0.20 +0.2
5,701,272 + BWI76_RS27480 0.20 +0.1
5,701,272 + BWI76_RS27480 0.20 +0.6
5,701,280 - BWI76_RS27480 0.21 +0.4
5,701,280 - BWI76_RS27480 0.21 +0.3
5,701,280 - BWI76_RS27480 0.21 +0.1
5,701,281 - BWI76_RS27480 0.21 -0.8
5,701,292 + BWI76_RS27480 0.22 +0.3
5,701,308 + BWI76_RS27480 0.23 +0.4
5,701,308 - BWI76_RS27480 0.23 +0.2
5,701,346 - BWI76_RS27480 0.27 -2.1
5,701,371 - BWI76_RS27480 0.29 -0.1
5,701,474 - BWI76_RS27480 0.39 +0.6
5,701,494 + BWI76_RS27480 0.41 +3.1
5,701,542 - BWI76_RS27480 0.46 +0.7
5,701,684 - BWI76_RS27480 0.59 +0.5
5,701,745 - BWI76_RS27480 0.65 +0.3
5,701,814 + BWI76_RS27480 0.72 +0.0
5,701,856 + BWI76_RS27480 0.76 +2.0
5,701,864 - BWI76_RS27480 0.77 +0.9
5,701,876 + +1.1
5,701,897 - +0.1
5,701,908 + BWI76_RS27480 0.81 -0.1
5,701,955 - BWI76_RS27480 0.85 -0.8
5,701,978 + BWI76_RS27480 0.88 +0.0
5,701,979 + BWI76_RS27480 0.88 -0.6
5,701,986 - BWI76_RS27480 0.88 -1.2

Or see this region's nucleotide sequence