Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23590 and BWI76_RS23595 are separated by 70 nucleotides BWI76_RS23595 and BWI76_RS23600 are separated by 11 nucleotides BWI76_RS23600 and BWI76_RS23605 are separated by 269 nucleotides BWI76_RS23605 and BWI76_RS23610 are separated by 6 nucleotides
BWI76_RS23590: BWI76_RS23590 - EAL domain-containing protein, at 4,919,684 to 4,921,120
_RS23590
BWI76_RS23595: BWI76_RS23595 - N-acetyltransferase, at 4,921,191 to 4,921,463
_RS23595
BWI76_RS23600: BWI76_RS23600 - hypothetical protein, at 4,921,475 to 4,921,705
_RS23600
BWI76_RS23605: BWI76_RS23605 - hypothetical protein, at 4,921,975 to 4,922,247
_RS23605
BWI76_RS23610: BWI76_RS23610 - multidrug transporter subunit MdtN, at 4,922,254 to 4,923,282
_RS23610
Position (kb) 4921
4922 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4920.270 kb on - strand, within BWI76_RS23590 at 4920.518 kb on + strand, within BWI76_RS23590 at 4920.559 kb on - strand, within BWI76_RS23590 at 4920.908 kb on - strand, within BWI76_RS23590 at 4920.910 kb on + strand, within BWI76_RS23590 at 4920.945 kb on - strand, within BWI76_RS23590 at 4920.965 kb on + strand, within BWI76_RS23590 at 4920.973 kb on - strand, within BWI76_RS23590 at 4921.028 kb on + strand at 4921.062 kb on + strand at 4921.081 kb on + strand at 4921.081 kb on + strand at 4921.089 kb on - strand at 4921.089 kb on - strand at 4921.089 kb on - strand at 4921.089 kb on - strand at 4921.089 kb on - strand at 4921.089 kb on - strand at 4921.089 kb on - strand at 4921.089 kb on - strand at 4921.100 kb on - strand at 4921.106 kb on - strand at 4921.131 kb on + strand at 4921.153 kb on + strand at 4921.153 kb on + strand at 4921.153 kb on + strand at 4921.161 kb on - strand at 4921.269 kb on - strand, within BWI76_RS23595 at 4921.328 kb on + strand, within BWI76_RS23595 at 4921.328 kb on - strand, within BWI76_RS23595 at 4921.363 kb on + strand, within BWI76_RS23595 at 4921.363 kb on + strand, within BWI76_RS23595 at 4921.363 kb on + strand, within BWI76_RS23595 at 4921.363 kb on + strand, within BWI76_RS23595 at 4921.371 kb on - strand, within BWI76_RS23595 at 4921.371 kb on - strand, within BWI76_RS23595 at 4921.378 kb on + strand, within BWI76_RS23595 at 4921.448 kb on - strand at 4921.490 kb on + strand at 4921.497 kb on - strand at 4921.498 kb on - strand, within BWI76_RS23600 at 4921.502 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.516 kb on + strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.522 kb on + strand, within BWI76_RS23600 at 4921.522 kb on + strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.531 kb on - strand, within BWI76_RS23600 at 4921.535 kb on + strand, within BWI76_RS23600 at 4921.543 kb on - strand, within BWI76_RS23600 at 4921.546 kb on + strand, within BWI76_RS23600 at 4921.559 kb on + strand, within BWI76_RS23600 at 4921.588 kb on + strand, within BWI76_RS23600 at 4921.589 kb on - strand, within BWI76_RS23600 at 4921.616 kb on - strand, within BWI76_RS23600 at 4921.627 kb on - strand, within BWI76_RS23600 at 4921.635 kb on + strand, within BWI76_RS23600 at 4921.643 kb on - strand, within BWI76_RS23600 at 4921.665 kb on + strand, within BWI76_RS23600 at 4921.665 kb on + strand, within BWI76_RS23600 at 4921.665 kb on + strand, within BWI76_RS23600 at 4921.665 kb on + strand, within BWI76_RS23600 at 4921.673 kb on - strand, within BWI76_RS23600 at 4921.673 kb on - strand, within BWI76_RS23600 at 4921.750 kb on + strand at 4921.758 kb on - strand at 4921.760 kb on + strand at 4921.760 kb on + strand at 4921.760 kb on + strand at 4921.768 kb on - strand at 4921.839 kb on + strand at 4921.891 kb on + strand at 4921.893 kb on + strand at 4921.901 kb on - strand at 4921.930 kb on + strand at 4921.938 kb on - strand at 4921.938 kb on - strand at 4921.945 kb on + strand at 4921.945 kb on + strand at 4921.945 kb on + strand at 4921.953 kb on - strand at 4921.953 kb on - strand at 4921.953 kb on - strand at 4921.953 kb on - strand at 4921.960 kb on + strand at 4921.985 kb on - strand at 4922.009 kb on - strand, within BWI76_RS23605 at 4922.037 kb on - strand, within BWI76_RS23605 at 4922.037 kb on - strand, within BWI76_RS23605 at 4922.050 kb on - strand, within BWI76_RS23605 at 4922.062 kb on + strand, within BWI76_RS23605 at 4922.064 kb on + strand, within BWI76_RS23605 at 4922.126 kb on - strand, within BWI76_RS23605 at 4922.129 kb on + strand, within BWI76_RS23605 at 4922.129 kb on + strand, within BWI76_RS23605 at 4922.129 kb on + strand, within BWI76_RS23605 at 4922.137 kb on - strand, within BWI76_RS23605 at 4922.143 kb on - strand, within BWI76_RS23605 at 4922.178 kb on + strand, within BWI76_RS23605 at 4922.179 kb on + strand, within BWI76_RS23605 at 4922.179 kb on + strand, within BWI76_RS23605 at 4922.189 kb on - strand, within BWI76_RS23605 at 4922.202 kb on - strand, within BWI76_RS23605 at 4922.218 kb on + strand, within BWI76_RS23605 at 4922.218 kb on + strand, within BWI76_RS23605 at 4922.235 kb on - strand at 4922.244 kb on + strand at 4922.257 kb on + strand at 4922.259 kb on - strand at 4922.416 kb on - strand, within BWI76_RS23610
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 4,920,270 - BWI76_RS23590 0.41 +0.1 4,920,518 + BWI76_RS23590 0.58 +2.0 4,920,559 - BWI76_RS23590 0.61 +0.4 4,920,908 - BWI76_RS23590 0.85 +0.7 4,920,910 + BWI76_RS23590 0.85 +0.6 4,920,945 - BWI76_RS23590 0.88 -0.4 4,920,965 + BWI76_RS23590 0.89 -0.2 4,920,973 - BWI76_RS23590 0.90 +1.0 4,921,028 + -0.0 4,921,062 + +0.1 4,921,081 + -0.2 4,921,081 + +0.1 4,921,089 - +1.0 4,921,089 - -0.3 4,921,089 - -0.3 4,921,089 - +0.3 4,921,089 - +1.0 4,921,089 - +0.6 4,921,089 - +0.0 4,921,089 - -0.2 4,921,100 - +0.2 4,921,106 - -0.8 4,921,131 + +0.1 4,921,153 + +0.3 4,921,153 + -2.8 4,921,153 + +0.1 4,921,161 - +0.5 4,921,269 - BWI76_RS23595 0.29 +0.7 4,921,328 + BWI76_RS23595 0.50 +0.2 4,921,328 - BWI76_RS23595 0.50 -2.2 4,921,363 + BWI76_RS23595 0.63 +0.5 4,921,363 + BWI76_RS23595 0.63 +1.3 4,921,363 + BWI76_RS23595 0.63 +0.3 4,921,363 + BWI76_RS23595 0.63 +0.5 4,921,371 - BWI76_RS23595 0.66 +1.4 4,921,371 - BWI76_RS23595 0.66 +0.0 4,921,378 + BWI76_RS23595 0.68 +1.2 4,921,448 - +0.4 4,921,490 + +0.4 4,921,497 - +0.7 4,921,498 - BWI76_RS23600 0.10 -0.2 4,921,502 + BWI76_RS23600 0.12 +0.6 4,921,511 + BWI76_RS23600 0.16 +0.8 4,921,511 + BWI76_RS23600 0.16 +0.1 4,921,511 + BWI76_RS23600 0.16 -0.7 4,921,511 + BWI76_RS23600 0.16 +0.0 4,921,511 + BWI76_RS23600 0.16 -0.6 4,921,516 + BWI76_RS23600 0.18 +0.5 4,921,519 - BWI76_RS23600 0.19 +0.6 4,921,519 - BWI76_RS23600 0.19 +0.2 4,921,519 - BWI76_RS23600 0.19 +0.2 4,921,519 - BWI76_RS23600 0.19 +1.3 4,921,519 - BWI76_RS23600 0.19 +1.0 4,921,519 - BWI76_RS23600 0.19 -0.5 4,921,521 + BWI76_RS23600 0.20 +0.2 4,921,521 + BWI76_RS23600 0.20 +0.2 4,921,521 + BWI76_RS23600 0.20 +0.2 4,921,521 + BWI76_RS23600 0.20 +0.3 4,921,521 + BWI76_RS23600 0.20 -0.1 4,921,522 + BWI76_RS23600 0.20 -1.8 4,921,522 + BWI76_RS23600 0.20 +0.8 4,921,529 - BWI76_RS23600 0.23 +1.3 4,921,529 - BWI76_RS23600 0.23 -0.6 4,921,529 - BWI76_RS23600 0.23 +0.5 4,921,529 - BWI76_RS23600 0.23 -0.9 4,921,529 - BWI76_RS23600 0.23 +1.2 4,921,531 - BWI76_RS23600 0.24 -0.3 4,921,535 + BWI76_RS23600 0.26 -0.6 4,921,543 - BWI76_RS23600 0.29 +0.1 4,921,546 + BWI76_RS23600 0.31 +1.1 4,921,559 + BWI76_RS23600 0.36 +1.0 4,921,588 + BWI76_RS23600 0.49 +0.5 4,921,589 - BWI76_RS23600 0.49 +0.2 4,921,616 - BWI76_RS23600 0.61 -0.8 4,921,627 - BWI76_RS23600 0.66 -0.2 4,921,635 + BWI76_RS23600 0.69 +0.4 4,921,643 - BWI76_RS23600 0.73 -0.1 4,921,665 + BWI76_RS23600 0.82 -1.6 4,921,665 + BWI76_RS23600 0.82 -1.0 4,921,665 + BWI76_RS23600 0.82 -1.0 4,921,665 + BWI76_RS23600 0.82 +1.3 4,921,673 - BWI76_RS23600 0.86 +1.6 4,921,673 - BWI76_RS23600 0.86 -0.7 4,921,750 + +0.2 4,921,758 - +0.6 4,921,760 + +0.8 4,921,760 + +0.1 4,921,760 + +0.2 4,921,768 - +0.6 4,921,839 + +0.1 4,921,891 + -0.6 4,921,893 + +1.0 4,921,901 - -0.1 4,921,930 + -0.4 4,921,938 - +0.2 4,921,938 - +0.7 4,921,945 + +1.6 4,921,945 + -0.2 4,921,945 + -1.2 4,921,953 - -0.4 4,921,953 - -0.4 4,921,953 - +0.6 4,921,953 - +0.4 4,921,960 + -0.6 4,921,985 - -2.1 4,922,009 - BWI76_RS23605 0.12 -0.6 4,922,037 - BWI76_RS23605 0.23 +1.0 4,922,037 - BWI76_RS23605 0.23 -1.6 4,922,050 - BWI76_RS23605 0.27 -0.6 4,922,062 + BWI76_RS23605 0.32 +1.6 4,922,064 + BWI76_RS23605 0.33 -1.8 4,922,126 - BWI76_RS23605 0.55 -0.3 4,922,129 + BWI76_RS23605 0.56 +0.5 4,922,129 + BWI76_RS23605 0.56 -2.2 4,922,129 + BWI76_RS23605 0.56 -0.5 4,922,137 - BWI76_RS23605 0.59 -0.6 4,922,143 - BWI76_RS23605 0.62 -1.3 4,922,178 + BWI76_RS23605 0.74 -0.4 4,922,179 + BWI76_RS23605 0.75 -0.3 4,922,179 + BWI76_RS23605 0.75 +1.4 4,922,189 - BWI76_RS23605 0.78 +0.3 4,922,202 - BWI76_RS23605 0.83 -2.8 4,922,218 + BWI76_RS23605 0.89 -0.8 4,922,218 + BWI76_RS23605 0.89 +0.7 4,922,235 - -2.9 4,922,244 + -0.2 4,922,257 + -1.3 4,922,259 - +1.7 4,922,416 - BWI76_RS23610 0.16 +0.4
Or see this region's nucleotide sequence