Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19390 and BWI76_RS19395 are separated by 99 nucleotides BWI76_RS19395 and BWI76_RS19400 are separated by 2 nucleotides
BWI76_RS19390: BWI76_RS19390 - LysR family transcriptional regulator, at 4,043,767 to 4,044,714
_RS19390
BWI76_RS19395: BWI76_RS19395 - adenine deaminase, at 4,044,814 to 4,046,625
_RS19395
BWI76_RS19400: BWI76_RS19400 - NCS2 family permease, at 4,046,628 to 4,047,971
_RS19400
Position (kb) 4044
4045
4046
4047 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4043.924 kb on + strand, within BWI76_RS19390 at 4044.037 kb on - strand, within BWI76_RS19390 at 4044.113 kb on + strand, within BWI76_RS19390 at 4044.153 kb on - strand, within BWI76_RS19390 at 4044.187 kb on - strand, within BWI76_RS19390 at 4044.562 kb on + strand, within BWI76_RS19390 at 4044.730 kb on - strand at 4044.764 kb on + strand at 4044.814 kb on - strand at 4045.078 kb on - strand, within BWI76_RS19395 at 4045.363 kb on + strand, within BWI76_RS19395 at 4045.402 kb on + strand, within BWI76_RS19395 at 4045.569 kb on + strand, within BWI76_RS19395 at 4045.695 kb on + strand, within BWI76_RS19395 at 4045.879 kb on - strand, within BWI76_RS19395 at 4045.928 kb on + strand, within BWI76_RS19395 at 4046.039 kb on + strand, within BWI76_RS19395 at 4046.100 kb on - strand, within BWI76_RS19395 at 4046.116 kb on - strand, within BWI76_RS19395 at 4046.118 kb on + strand, within BWI76_RS19395 at 4046.369 kb on + strand, within BWI76_RS19395 at 4046.485 kb on + strand at 4046.829 kb on + strand, within BWI76_RS19400 at 4046.837 kb on - strand, within BWI76_RS19400 at 4046.837 kb on - strand, within BWI76_RS19400 at 4046.837 kb on - strand, within BWI76_RS19400 at 4046.913 kb on + strand, within BWI76_RS19400 at 4046.921 kb on - strand, within BWI76_RS19400 at 4047.126 kb on + strand, within BWI76_RS19400 at 4047.268 kb on + strand, within BWI76_RS19400 at 4047.306 kb on - strand, within BWI76_RS19400 at 4047.447 kb on + strand, within BWI76_RS19400
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 4,043,924 + BWI76_RS19390 0.17 -3.0 4,044,037 - BWI76_RS19390 0.28 +0.4 4,044,113 + BWI76_RS19390 0.36 +1.2 4,044,153 - BWI76_RS19390 0.41 +2.0 4,044,187 - BWI76_RS19390 0.44 -0.9 4,044,562 + BWI76_RS19390 0.84 +0.1 4,044,730 - +0.7 4,044,764 + +0.3 4,044,814 - -0.1 4,045,078 - BWI76_RS19395 0.15 -0.1 4,045,363 + BWI76_RS19395 0.30 +0.1 4,045,402 + BWI76_RS19395 0.32 +1.5 4,045,569 + BWI76_RS19395 0.42 +0.4 4,045,695 + BWI76_RS19395 0.49 +1.4 4,045,879 - BWI76_RS19395 0.59 +0.4 4,045,928 + BWI76_RS19395 0.61 +1.6 4,046,039 + BWI76_RS19395 0.68 +0.3 4,046,100 - BWI76_RS19395 0.71 +0.5 4,046,116 - BWI76_RS19395 0.72 +0.9 4,046,118 + BWI76_RS19395 0.72 -0.1 4,046,369 + BWI76_RS19395 0.86 -2.1 4,046,485 + -0.4 4,046,829 + BWI76_RS19400 0.15 -1.7 4,046,837 - BWI76_RS19400 0.16 -2.1 4,046,837 - BWI76_RS19400 0.16 -0.3 4,046,837 - BWI76_RS19400 0.16 +0.7 4,046,913 + BWI76_RS19400 0.21 +0.6 4,046,921 - BWI76_RS19400 0.22 +0.7 4,047,126 + BWI76_RS19400 0.37 -0.8 4,047,268 + BWI76_RS19400 0.48 +1.2 4,047,306 - BWI76_RS19400 0.50 -0.1 4,047,447 + BWI76_RS19400 0.61 -1.1
Or see this region's nucleotide sequence