Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14045

Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14040 and BWI76_RS14045 are separated by 324 nucleotidesBWI76_RS14045 and BWI76_RS14050 are separated by 14 nucleotides BWI76_RS14040: BWI76_RS14040 - thiaminase, at 2,933,962 to 2,934,657 _RS14040 BWI76_RS14045: BWI76_RS14045 - oxidoreductase, at 2,934,982 to 2,936,154 _RS14045 BWI76_RS14050: BWI76_RS14050 - AP endonuclease, family 2, at 2,936,169 to 2,937,092 _RS14050 Position (kb) 2934 2935 2936 2937Strain fitness (log2 ratio) -1 0 1at 2933.994 kb on - strandat 2934.013 kb on - strandat 2934.039 kb on - strand, within BWI76_RS14040at 2934.039 kb on - strand, within BWI76_RS14040at 2934.870 kb on - strandat 2935.033 kb on + strandat 2935.045 kb on - strandat 2935.388 kb on - strand, within BWI76_RS14045at 2936.221 kb on - strandat 2936.408 kb on + strand, within BWI76_RS14050at 2936.855 kb on + strand, within BWI76_RS14050

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
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2,933,994 - -0.9
2,934,013 - -1.7
2,934,039 - BWI76_RS14040 0.11 +0.8
2,934,039 - BWI76_RS14040 0.11 +0.1
2,934,870 - +0.3
2,935,033 + +0.5
2,935,045 - +0.6
2,935,388 - BWI76_RS14045 0.35 +0.6
2,936,221 - +0.4
2,936,408 + BWI76_RS14050 0.26 -1.5
2,936,855 + BWI76_RS14050 0.74 -0.5

Or see this region's nucleotide sequence