Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09670

Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09660 and BWI76_RS09665 are separated by 121 nucleotidesBWI76_RS09665 and BWI76_RS09670 are separated by 8 nucleotidesBWI76_RS09670 and BWI76_RS09675 are separated by 90 nucleotides BWI76_RS09660: BWI76_RS09660 - DNA translocase FtsK, at 2,020,906 to 2,025,024 _RS09660 BWI76_RS09665: BWI76_RS09665 - outer membrane lipoprotein carrier protein LolA, at 2,025,146 to 2,025,757 _RS09665 BWI76_RS09670: BWI76_RS09670 - recombination factor protein RarA, at 2,025,766 to 2,027,109 _RS09670 BWI76_RS09675: BWI76_RS09675 - serine--tRNA ligase, at 2,027,200 to 2,028,492 _RS09675 Position (kb) 2025 2026 2027 2028Strain fitness (log2 ratio) -3 -2 -1 0 1at 2025.846 kb on + strandat 2026.301 kb on - strand, within BWI76_RS09670at 2026.613 kb on - strand, within BWI76_RS09670at 2026.819 kb on + strand, within BWI76_RS09670

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
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2,025,846 + -0.4
2,026,301 - BWI76_RS09670 0.40 -2.8
2,026,613 - BWI76_RS09670 0.63 -1.8
2,026,819 + BWI76_RS09670 0.78 -1.4

Or see this region's nucleotide sequence