Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07340 and BWI76_RS07345 are separated by 19 nucleotides BWI76_RS07345 and BWI76_RS07350 are separated by 131 nucleotides BWI76_RS07350 and BWI76_RS07355 are separated by 365 nucleotides
BWI76_RS07340: BWI76_RS07340 - amidohydrolase, at 1,546,555 to 1,547,733
_RS07340
BWI76_RS07345: BWI76_RS07345 - family 3 extracellular solute-binding protein, at 1,547,753 to 1,548,529
_RS07345
BWI76_RS07350: BWI76_RS07350 - alcohol dehydrogenase, at 1,548,661 to 1,549,614
_RS07350
BWI76_RS07355: BWI76_RS07355 - TonB-dependent siderophore receptor, at 1,549,980 to 1,552,169
_RS07355
Position (kb) 1548
1549
1550 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1547.732 kb on - strand at 1547.734 kb on + strand at 1547.778 kb on - strand at 1547.778 kb on - strand at 1547.788 kb on - strand at 1547.855 kb on - strand, within BWI76_RS07345 at 1547.884 kb on + strand, within BWI76_RS07345 at 1547.929 kb on + strand, within BWI76_RS07345 at 1547.937 kb on - strand, within BWI76_RS07345 at 1547.943 kb on - strand, within BWI76_RS07345 at 1547.970 kb on + strand, within BWI76_RS07345 at 1548.030 kb on - strand, within BWI76_RS07345 at 1548.030 kb on - strand, within BWI76_RS07345 at 1548.067 kb on + strand, within BWI76_RS07345 at 1548.075 kb on - strand, within BWI76_RS07345 at 1548.075 kb on - strand, within BWI76_RS07345 at 1548.188 kb on + strand, within BWI76_RS07345 at 1548.201 kb on - strand, within BWI76_RS07345 at 1548.539 kb on + strand at 1548.553 kb on + strand at 1548.553 kb on + strand at 1548.561 kb on - strand at 1548.883 kb on - strand, within BWI76_RS07350 at 1548.883 kb on - strand, within BWI76_RS07350 at 1548.914 kb on - strand, within BWI76_RS07350 at 1549.476 kb on - strand, within BWI76_RS07350 at 1549.591 kb on + strand at 1549.599 kb on - strand at 1549.777 kb on - strand at 1550.028 kb on + strand at 1550.109 kb on + strand at 1550.152 kb on - strand at 1550.391 kb on + strand, within BWI76_RS07355 at 1550.491 kb on - strand, within BWI76_RS07355
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 1,547,732 - +0.9 1,547,734 + +2.1 1,547,778 - -0.5 1,547,778 - +0.3 1,547,788 - +0.9 1,547,855 - BWI76_RS07345 0.13 -0.7 1,547,884 + BWI76_RS07345 0.17 +1.5 1,547,929 + BWI76_RS07345 0.23 -2.9 1,547,937 - BWI76_RS07345 0.24 +0.3 1,547,943 - BWI76_RS07345 0.24 -2.2 1,547,970 + BWI76_RS07345 0.28 -1.4 1,548,030 - BWI76_RS07345 0.36 +0.5 1,548,030 - BWI76_RS07345 0.36 -0.2 1,548,067 + BWI76_RS07345 0.40 -0.2 1,548,075 - BWI76_RS07345 0.41 +0.6 1,548,075 - BWI76_RS07345 0.41 -1.7 1,548,188 + BWI76_RS07345 0.56 -0.2 1,548,201 - BWI76_RS07345 0.58 +0.2 1,548,539 + +1.2 1,548,553 + +0.6 1,548,553 + -0.7 1,548,561 - +3.1 1,548,883 - BWI76_RS07350 0.23 +1.5 1,548,883 - BWI76_RS07350 0.23 +0.2 1,548,914 - BWI76_RS07350 0.27 -0.4 1,549,476 - BWI76_RS07350 0.85 +1.1 1,549,591 + +0.6 1,549,599 - +1.5 1,549,777 - -0.0 1,550,028 + -1.1 1,550,109 + -1.1 1,550,152 - -1.7 1,550,391 + BWI76_RS07355 0.19 +0.5 1,550,491 - BWI76_RS07355 0.23 +0.9
Or see this region's nucleotide sequence