Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03885 and BWI76_RS03890 are separated by 201 nucleotides BWI76_RS03890 and BWI76_RS03895 are separated by 10 nucleotides BWI76_RS03895 and BWI76_RS03900 are separated by 102 nucleotides
BWI76_RS03885: BWI76_RS03885 - hypothetical protein, at 802,871 to 804,085
_RS03885
BWI76_RS03890: BWI76_RS03890 - hypothetical protein, at 804,287 to 805,726
_RS03890
BWI76_RS03895: BWI76_RS03895 - reactive intermediate/imine deaminase, at 805,737 to 806,129
_RS03895
BWI76_RS03900: BWI76_RS03900 - Na+/proline symporter, at 806,232 to 807,719
_RS03900
Position (kb) 804
805
806 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 803.376 kb on - strand, within BWI76_RS03885 at 803.376 kb on - strand, within BWI76_RS03885 at 803.398 kb on + strand, within BWI76_RS03885 at 803.502 kb on + strand, within BWI76_RS03885 at 803.510 kb on - strand, within BWI76_RS03885 at 803.520 kb on - strand, within BWI76_RS03885 at 803.535 kb on - strand, within BWI76_RS03885 at 803.541 kb on - strand, within BWI76_RS03885 at 803.804 kb on + strand, within BWI76_RS03885 at 803.824 kb on + strand, within BWI76_RS03885 at 803.940 kb on - strand, within BWI76_RS03885 at 803.940 kb on - strand, within BWI76_RS03885 at 804.467 kb on + strand, within BWI76_RS03890 at 804.483 kb on + strand, within BWI76_RS03890 at 804.605 kb on - strand, within BWI76_RS03890 at 804.683 kb on + strand, within BWI76_RS03890 at 804.875 kb on + strand, within BWI76_RS03890 at 805.095 kb on + strand, within BWI76_RS03890 at 805.123 kb on + strand, within BWI76_RS03890 at 805.162 kb on + strand, within BWI76_RS03890 at 805.184 kb on + strand, within BWI76_RS03890 at 805.413 kb on - strand, within BWI76_RS03890 at 805.629 kb on + strand at 805.629 kb on + strand at 805.637 kb on - strand at 805.645 kb on + strand at 805.653 kb on - strand at 805.663 kb on - strand at 805.736 kb on + strand at 805.770 kb on + strand at 805.788 kb on + strand, within BWI76_RS03895 at 805.809 kb on + strand, within BWI76_RS03895 at 805.874 kb on + strand, within BWI76_RS03895 at 805.905 kb on + strand, within BWI76_RS03895 at 805.913 kb on - strand, within BWI76_RS03895 at 805.938 kb on + strand, within BWI76_RS03895 at 805.938 kb on + strand, within BWI76_RS03895 at 805.952 kb on - strand, within BWI76_RS03895 at 805.954 kb on + strand, within BWI76_RS03895 at 805.957 kb on - strand, within BWI76_RS03895 at 805.959 kb on + strand, within BWI76_RS03895 at 805.969 kb on + strand, within BWI76_RS03895 at 805.993 kb on + strand, within BWI76_RS03895 at 805.993 kb on + strand, within BWI76_RS03895 at 806.001 kb on - strand, within BWI76_RS03895 at 806.001 kb on - strand, within BWI76_RS03895 at 806.014 kb on - strand, within BWI76_RS03895 at 806.014 kb on - strand, within BWI76_RS03895 at 806.015 kb on + strand, within BWI76_RS03895 at 806.039 kb on + strand, within BWI76_RS03895 at 806.044 kb on - strand, within BWI76_RS03895 at 806.046 kb on + strand, within BWI76_RS03895 at 806.051 kb on + strand, within BWI76_RS03895 at 806.051 kb on + strand, within BWI76_RS03895 at 806.051 kb on + strand, within BWI76_RS03895 at 806.059 kb on - strand, within BWI76_RS03895 at 806.062 kb on + strand, within BWI76_RS03895 at 806.069 kb on + strand, within BWI76_RS03895 at 806.069 kb on + strand, within BWI76_RS03895 at 806.069 kb on + strand, within BWI76_RS03895 at 806.069 kb on + strand, within BWI76_RS03895 at 806.070 kb on - strand, within BWI76_RS03895 at 806.070 kb on - strand, within BWI76_RS03895 at 806.073 kb on + strand, within BWI76_RS03895 at 806.074 kb on - strand, within BWI76_RS03895 at 806.081 kb on - strand, within BWI76_RS03895 at 806.088 kb on + strand, within BWI76_RS03895 at 806.096 kb on + strand at 806.096 kb on + strand at 806.096 kb on - strand at 806.096 kb on - strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.116 kb on - strand at 806.116 kb on - strand at 806.116 kb on - strand at 806.116 kb on - strand at 806.184 kb on + strand at 806.184 kb on + strand at 806.184 kb on + strand at 806.184 kb on - strand at 806.184 kb on - strand at 806.184 kb on - strand at 806.186 kb on + strand at 806.186 kb on + strand at 806.186 kb on + strand at 806.186 kb on + strand at 806.186 kb on + strand at 806.192 kb on + strand at 806.192 kb on + strand at 806.192 kb on - strand at 806.194 kb on - strand at 806.194 kb on - strand at 806.199 kb on + strand at 806.199 kb on - strand at 806.199 kb on - strand at 806.201 kb on - strand at 806.201 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.209 kb on + strand at 806.230 kb on - strand at 806.257 kb on + strand at 806.265 kb on - strand at 806.276 kb on + strand at 806.284 kb on - strand at 806.285 kb on - strand at 806.287 kb on + strand at 806.289 kb on - strand at 806.290 kb on - strand at 806.290 kb on - strand at 806.293 kb on + strand at 806.293 kb on + strand at 806.293 kb on + strand at 806.295 kb on - strand at 806.296 kb on + strand at 806.296 kb on + strand at 806.296 kb on + strand at 806.300 kb on + strand at 806.300 kb on - strand at 806.300 kb on - strand at 806.300 kb on - strand at 806.301 kb on - strand at 806.301 kb on - strand at 806.304 kb on - strand at 806.304 kb on - strand at 806.309 kb on - strand at 806.343 kb on + strand at 806.372 kb on + strand at 806.372 kb on + strand at 806.373 kb on + strand at 806.375 kb on - strand at 806.377 kb on + strand at 806.380 kb on - strand at 806.382 kb on - strand, within BWI76_RS03900 at 806.401 kb on - strand, within BWI76_RS03900 at 806.401 kb on - strand, within BWI76_RS03900 at 806.401 kb on - strand, within BWI76_RS03900 at 806.404 kb on + strand, within BWI76_RS03900 at 806.404 kb on + strand, within BWI76_RS03900 at 806.404 kb on + strand, within BWI76_RS03900 at 806.409 kb on + strand, within BWI76_RS03900 at 806.412 kb on - strand, within BWI76_RS03900 at 806.418 kb on + strand, within BWI76_RS03900 at 806.418 kb on + strand, within BWI76_RS03900 at 806.419 kb on + strand, within BWI76_RS03900 at 806.432 kb on - strand, within BWI76_RS03900 at 806.464 kb on - strand, within BWI76_RS03900 at 806.482 kb on + strand, within BWI76_RS03900 at 806.482 kb on + strand, within BWI76_RS03900 at 806.482 kb on + strand, within BWI76_RS03900 at 806.482 kb on + strand, within BWI76_RS03900 at 806.487 kb on + strand, within BWI76_RS03900 at 806.489 kb on + strand, within BWI76_RS03900 at 806.490 kb on - strand, within BWI76_RS03900 at 806.490 kb on - strand, within BWI76_RS03900 at 806.490 kb on - strand, within BWI76_RS03900 at 806.502 kb on - strand, within BWI76_RS03900 at 806.504 kb on + strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.542 kb on + strand, within BWI76_RS03900 at 806.549 kb on + strand, within BWI76_RS03900 at 806.563 kb on - strand, within BWI76_RS03900 at 806.634 kb on - strand, within BWI76_RS03900 at 806.648 kb on - strand, within BWI76_RS03900 at 806.657 kb on + strand, within BWI76_RS03900 at 806.658 kb on + strand, within BWI76_RS03900 at 806.658 kb on + strand, within BWI76_RS03900 at 806.663 kb on + strand, within BWI76_RS03900 at 806.663 kb on + strand, within BWI76_RS03900 at 806.666 kb on - strand, within BWI76_RS03900 at 806.666 kb on - strand, within BWI76_RS03900 at 806.672 kb on - strand, within BWI76_RS03900 at 806.676 kb on + strand, within BWI76_RS03900 at 806.676 kb on + strand, within BWI76_RS03900 at 806.709 kb on + strand, within BWI76_RS03900 at 806.709 kb on + strand, within BWI76_RS03900 at 806.709 kb on + strand, within BWI76_RS03900 at 806.717 kb on - strand, within BWI76_RS03900 at 806.717 kb on - strand, within BWI76_RS03900 at 806.717 kb on - strand, within BWI76_RS03900
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 803,376 - BWI76_RS03885 0.42 +0.1 803,376 - BWI76_RS03885 0.42 -0.5 803,398 + BWI76_RS03885 0.43 +1.1 803,502 + BWI76_RS03885 0.52 -0.1 803,510 - BWI76_RS03885 0.53 +1.0 803,520 - BWI76_RS03885 0.53 +0.1 803,535 - BWI76_RS03885 0.55 +0.3 803,541 - BWI76_RS03885 0.55 -0.0 803,804 + BWI76_RS03885 0.77 +1.7 803,824 + BWI76_RS03885 0.78 +0.6 803,940 - BWI76_RS03885 0.88 +0.1 803,940 - BWI76_RS03885 0.88 -0.2 804,467 + BWI76_RS03890 0.12 +0.2 804,483 + BWI76_RS03890 0.14 +0.5 804,605 - BWI76_RS03890 0.22 +0.3 804,683 + BWI76_RS03890 0.28 +1.6 804,875 + BWI76_RS03890 0.41 -1.7 805,095 + BWI76_RS03890 0.56 +1.6 805,123 + BWI76_RS03890 0.58 +2.1 805,162 + BWI76_RS03890 0.61 -0.3 805,184 + BWI76_RS03890 0.62 +0.4 805,413 - BWI76_RS03890 0.78 +1.1 805,629 + +0.1 805,629 + -0.2 805,637 - +2.0 805,645 + +0.1 805,653 - -0.2 805,663 - -0.6 805,736 + +0.2 805,770 + +1.3 805,788 + BWI76_RS03895 0.13 -1.5 805,809 + BWI76_RS03895 0.18 -0.0 805,874 + BWI76_RS03895 0.35 +0.2 805,905 + BWI76_RS03895 0.43 -0.1 805,913 - BWI76_RS03895 0.45 +0.7 805,938 + BWI76_RS03895 0.51 +1.9 805,938 + BWI76_RS03895 0.51 +0.4 805,952 - BWI76_RS03895 0.55 -0.9 805,954 + BWI76_RS03895 0.55 +1.2 805,957 - BWI76_RS03895 0.56 -0.6 805,959 + BWI76_RS03895 0.56 +0.2 805,969 + BWI76_RS03895 0.59 +2.1 805,993 + BWI76_RS03895 0.65 -0.1 805,993 + BWI76_RS03895 0.65 -0.5 806,001 - BWI76_RS03895 0.67 +0.8 806,001 - BWI76_RS03895 0.67 +0.2 806,014 - BWI76_RS03895 0.70 -0.7 806,014 - BWI76_RS03895 0.70 +0.6 806,015 + BWI76_RS03895 0.71 -0.1 806,039 + BWI76_RS03895 0.77 +0.6 806,044 - BWI76_RS03895 0.78 -0.5 806,046 + BWI76_RS03895 0.79 +0.3 806,051 + BWI76_RS03895 0.80 +0.9 806,051 + BWI76_RS03895 0.80 +0.2 806,051 + BWI76_RS03895 0.80 +0.4 806,059 - BWI76_RS03895 0.82 +0.9 806,062 + BWI76_RS03895 0.83 -1.6 806,069 + BWI76_RS03895 0.84 +2.4 806,069 + BWI76_RS03895 0.84 -1.5 806,069 + BWI76_RS03895 0.84 +0.4 806,069 + BWI76_RS03895 0.84 +0.4 806,070 - BWI76_RS03895 0.85 -1.0 806,070 - BWI76_RS03895 0.85 -1.2 806,073 + BWI76_RS03895 0.85 -0.5 806,074 - BWI76_RS03895 0.86 -0.9 806,081 - BWI76_RS03895 0.88 -0.9 806,088 + BWI76_RS03895 0.89 -0.0 806,096 + +0.8 806,096 + +0.2 806,096 - +1.7 806,096 - +1.1 806,097 + -0.1 806,097 + -0.4 806,097 + +0.5 806,097 + +0.8 806,097 + -0.7 806,097 + -0.2 806,097 + -0.3 806,097 + -0.1 806,097 + -0.5 806,097 + +1.0 806,105 - +1.1 806,105 - +0.4 806,105 - +0.2 806,105 - +1.1 806,105 - +0.6 806,105 - +1.5 806,105 - +0.4 806,105 - -0.3 806,105 - -1.7 806,105 - +1.4 806,105 - +0.3 806,105 - +2.3 806,105 - -0.5 806,105 - -0.5 806,105 - +0.2 806,105 - -0.6 806,105 - +0.0 806,107 + +1.0 806,107 + +0.9 806,107 + +0.4 806,107 + +0.1 806,107 + -1.5 806,107 + -0.9 806,107 + -0.1 806,107 + +0.4 806,107 + -2.1 806,107 + -0.6 806,107 + +1.1 806,107 + -1.2 806,107 + +0.9 806,107 + +0.3 806,107 + -0.2 806,107 + -1.5 806,107 + -2.4 806,115 - -3.9 806,115 - -1.0 806,115 - -1.2 806,115 - +0.9 806,115 - +0.1 806,115 - +0.2 806,115 - +0.6 806,115 - -0.1 806,115 - -0.5 806,115 - -1.7 806,115 - +0.5 806,115 - -0.2 806,115 - +0.3 806,115 - +1.5 806,116 - +0.2 806,116 - +1.8 806,116 - +0.4 806,116 - -0.5 806,184 + -0.8 806,184 + +0.1 806,184 + +0.7 806,184 - +0.1 806,184 - -0.9 806,184 - +0.1 806,186 + +0.4 806,186 + +0.4 806,186 + -0.8 806,186 + -0.0 806,186 + -0.1 806,192 + -0.1 806,192 + -0.3 806,192 - +1.1 806,194 - -1.0 806,194 - -0.1 806,199 + -0.6 806,199 - -2.6 806,199 - -0.1 806,201 - -1.4 806,201 - +0.4 806,207 - -0.6 806,207 - +0.4 806,207 - +0.1 806,207 - +0.5 806,207 - +0.3 806,207 - +0.2 806,209 + -0.0 806,230 - +0.8 806,257 + -1.2 806,265 - -0.6 806,276 + +0.1 806,284 - +0.1 806,285 - +0.5 806,287 + +0.2 806,289 - +0.5 806,290 - +1.1 806,290 - +0.4 806,293 + +1.1 806,293 + +0.1 806,293 + -0.5 806,295 - +0.2 806,296 + +1.1 806,296 + -0.0 806,296 + +0.5 806,300 + -0.6 806,300 - -1.5 806,300 - +0.3 806,300 - -0.2 806,301 - -0.7 806,301 - -0.1 806,304 - -1.2 806,304 - -0.6 806,309 - -0.6 806,343 + +0.1 806,372 + -0.2 806,372 + +0.8 806,373 + -0.4 806,375 - -0.2 806,377 + +1.2 806,380 - -0.7 806,382 - BWI76_RS03900 0.10 +0.1 806,401 - BWI76_RS03900 0.11 -1.8 806,401 - BWI76_RS03900 0.11 -0.1 806,401 - BWI76_RS03900 0.11 -0.5 806,404 + BWI76_RS03900 0.12 -0.0 806,404 + BWI76_RS03900 0.12 -0.5 806,404 + BWI76_RS03900 0.12 -1.7 806,409 + BWI76_RS03900 0.12 +0.8 806,412 - BWI76_RS03900 0.12 +0.3 806,418 + BWI76_RS03900 0.12 +0.3 806,418 + BWI76_RS03900 0.12 -0.5 806,419 + BWI76_RS03900 0.13 +0.7 806,432 - BWI76_RS03900 0.13 +0.6 806,464 - BWI76_RS03900 0.16 -0.9 806,482 + BWI76_RS03900 0.17 +0.9 806,482 + BWI76_RS03900 0.17 -0.1 806,482 + BWI76_RS03900 0.17 +0.1 806,482 + BWI76_RS03900 0.17 +0.8 806,487 + BWI76_RS03900 0.17 +1.3 806,489 + BWI76_RS03900 0.17 -0.4 806,490 - BWI76_RS03900 0.17 +0.4 806,490 - BWI76_RS03900 0.17 +0.1 806,490 - BWI76_RS03900 0.17 +0.2 806,502 - BWI76_RS03900 0.18 -1.0 806,504 + BWI76_RS03900 0.18 -0.0 806,512 - BWI76_RS03900 0.19 +1.0 806,512 - BWI76_RS03900 0.19 +0.9 806,512 - BWI76_RS03900 0.19 -0.5 806,512 - BWI76_RS03900 0.19 +1.5 806,512 - BWI76_RS03900 0.19 +2.1 806,542 + BWI76_RS03900 0.21 +1.1 806,549 + BWI76_RS03900 0.21 +1.1 806,563 - BWI76_RS03900 0.22 +1.1 806,634 - BWI76_RS03900 0.27 +0.1 806,648 - BWI76_RS03900 0.28 +0.7 806,657 + BWI76_RS03900 0.29 +0.2 806,658 + BWI76_RS03900 0.29 +0.2 806,658 + BWI76_RS03900 0.29 -0.0 806,663 + BWI76_RS03900 0.29 +0.1 806,663 + BWI76_RS03900 0.29 -0.5 806,666 - BWI76_RS03900 0.29 -1.6 806,666 - BWI76_RS03900 0.29 -1.0 806,672 - BWI76_RS03900 0.30 +0.1 806,676 + BWI76_RS03900 0.30 +0.1 806,676 + BWI76_RS03900 0.30 +0.6 806,709 + BWI76_RS03900 0.32 +1.1 806,709 + BWI76_RS03900 0.32 -0.6 806,709 + BWI76_RS03900 0.32 +0.3 806,717 - BWI76_RS03900 0.33 +0.9 806,717 - BWI76_RS03900 0.33 +0.3 806,717 - BWI76_RS03900 0.33 -0.6
Or see this region's nucleotide sequence