Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02795 and BWI76_RS02800 are separated by 180 nucleotides BWI76_RS02800 and BWI76_RS02805 are separated by 10 nucleotides
BWI76_RS02795: BWI76_RS02795 - periplasmic binding protein/LacI transcriptional regulator, at 570,155 to 571,111
_RS02795
BWI76_RS02800: BWI76_RS02800 - ABC transporter, at 571,292 to 572,794
_RS02800
BWI76_RS02805: BWI76_RS02805 - sugar ABC transporter permease, at 572,805 to 573,830
_RS02805
Position (kb) 571
572
573 Strain fitness (log2 ratio) -2
-1
0
1 at 570.322 kb on + strand, within BWI76_RS02795 at 570.440 kb on + strand, within BWI76_RS02795 at 570.440 kb on + strand, within BWI76_RS02795 at 570.536 kb on - strand, within BWI76_RS02795 at 570.577 kb on + strand, within BWI76_RS02795 at 570.619 kb on + strand, within BWI76_RS02795 at 570.747 kb on - strand, within BWI76_RS02795 at 570.808 kb on - strand, within BWI76_RS02795 at 570.937 kb on + strand, within BWI76_RS02795 at 570.945 kb on - strand, within BWI76_RS02795 at 570.946 kb on - strand, within BWI76_RS02795 at 570.946 kb on - strand, within BWI76_RS02795 at 571.068 kb on - strand at 571.171 kb on - strand at 571.189 kb on + strand at 571.271 kb on + strand at 571.271 kb on + strand at 571.279 kb on - strand at 571.279 kb on - strand at 571.279 kb on - strand at 571.311 kb on + strand at 571.430 kb on + strand at 571.767 kb on + strand, within BWI76_RS02800 at 571.814 kb on + strand, within BWI76_RS02800 at 571.912 kb on + strand, within BWI76_RS02800 at 571.912 kb on + strand, within BWI76_RS02800 at 572.002 kb on + strand, within BWI76_RS02800 at 572.058 kb on + strand, within BWI76_RS02800 at 572.586 kb on + strand, within BWI76_RS02800 at 572.633 kb on - strand at 572.689 kb on + strand at 572.739 kb on + strand at 572.865 kb on - strand at 573.046 kb on + strand, within BWI76_RS02805 at 573.263 kb on + strand, within BWI76_RS02805 at 573.268 kb on + strand, within BWI76_RS02805 at 573.526 kb on + strand, within BWI76_RS02805 at 573.558 kb on + strand, within BWI76_RS02805
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 570,322 + BWI76_RS02795 0.17 -0.6 570,440 + BWI76_RS02795 0.30 +0.3 570,440 + BWI76_RS02795 0.30 -0.6 570,536 - BWI76_RS02795 0.40 +0.9 570,577 + BWI76_RS02795 0.44 -0.4 570,619 + BWI76_RS02795 0.48 +0.5 570,747 - BWI76_RS02795 0.62 +0.1 570,808 - BWI76_RS02795 0.68 +1.2 570,937 + BWI76_RS02795 0.82 -0.1 570,945 - BWI76_RS02795 0.83 +0.5 570,946 - BWI76_RS02795 0.83 +0.2 570,946 - BWI76_RS02795 0.83 +0.2 571,068 - +0.3 571,171 - +0.1 571,189 + -0.1 571,271 + +0.1 571,271 + +1.2 571,279 - -1.6 571,279 - +0.9 571,279 - -0.7 571,311 + +0.5 571,430 + +1.1 571,767 + BWI76_RS02800 0.32 +1.2 571,814 + BWI76_RS02800 0.35 +0.7 571,912 + BWI76_RS02800 0.41 +1.4 571,912 + BWI76_RS02800 0.41 +1.3 572,002 + BWI76_RS02800 0.47 +0.0 572,058 + BWI76_RS02800 0.51 +0.2 572,586 + BWI76_RS02800 0.86 -0.0 572,633 - +1.2 572,689 + -0.2 572,739 + +1.2 572,865 - -0.4 573,046 + BWI76_RS02805 0.23 -0.1 573,263 + BWI76_RS02805 0.45 -2.4 573,268 + BWI76_RS02805 0.45 -0.8 573,526 + BWI76_RS02805 0.70 +0.1 573,558 + BWI76_RS02805 0.73 +0.3
Or see this region's nucleotide sequence