Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01240

Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS01230 and BWI76_RS01235 are separated by 49 nucleotidesBWI76_RS01235 and BWI76_RS01240 are separated by 155 nucleotidesBWI76_RS01240 and BWI76_RS01245 are separated by 67 nucleotides BWI76_RS01230: BWI76_RS01230 - chloramphenicol resistance permease RarD, at 252,092 to 252,985 _RS01230 BWI76_RS01235: BWI76_RS01235 - hypothetical protein, at 253,035 to 253,499 _RS01235 BWI76_RS01240: BWI76_RS01240 - phospholipase A, at 253,655 to 254,527 _RS01240 BWI76_RS01245: BWI76_RS01245 - DNA helicase RecQ, at 254,595 to 256,421 _RS01245 Position (kb) 253 254 255Strain fitness (log2 ratio) -1 0 1 2 3 4at 253.077 kb on - strandat 253.154 kb on + strand, within BWI76_RS01235at 253.273 kb on + strand, within BWI76_RS01235at 253.538 kb on - strandat 253.615 kb on - strandat 253.657 kb on + strandat 253.664 kb on + strandat 253.664 kb on + strandat 253.672 kb on - strandat 253.672 kb on - strandat 253.743 kb on + strand, within BWI76_RS01240at 253.815 kb on + strand, within BWI76_RS01240at 253.823 kb on - strand, within BWI76_RS01240at 253.939 kb on - strand, within BWI76_RS01240at 254.025 kb on - strand, within BWI76_RS01240at 254.123 kb on + strand, within BWI76_RS01240at 254.316 kb on + strand, within BWI76_RS01240at 254.331 kb on + strand, within BWI76_RS01240at 254.339 kb on - strand, within BWI76_RS01240at 254.427 kb on + strand, within BWI76_RS01240at 254.437 kb on + strand, within BWI76_RS01240at 254.639 kb on + strandat 254.703 kb on + strandat 254.722 kb on + strandat 254.722 kb on + strandat 254.769 kb on - strandat 254.831 kb on + strand, within BWI76_RS01245at 254.901 kb on - strand, within BWI76_RS01245at 255.222 kb on - strand, within BWI76_RS01245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
remove
253,077 - -0.1
253,154 + BWI76_RS01235 0.26 -0.2
253,273 + BWI76_RS01235 0.51 +0.9
253,538 - +1.2
253,615 - -0.8
253,657 + +0.2
253,664 + +1.2
253,664 + -0.2
253,672 - +1.2
253,672 - +1.3
253,743 + BWI76_RS01240 0.10 -0.3
253,815 + BWI76_RS01240 0.18 +1.5
253,823 - BWI76_RS01240 0.19 +1.7
253,939 - BWI76_RS01240 0.33 +1.4
254,025 - BWI76_RS01240 0.42 +2.1
254,123 + BWI76_RS01240 0.54 +0.8
254,316 + BWI76_RS01240 0.76 +1.1
254,331 + BWI76_RS01240 0.77 +0.4
254,339 - BWI76_RS01240 0.78 -0.0
254,427 + BWI76_RS01240 0.88 +4.5
254,437 + BWI76_RS01240 0.90 +0.9
254,639 + +1.3
254,703 + +0.6
254,722 + -1.4
254,722 + +1.5
254,769 - +0.3
254,831 + BWI76_RS01245 0.13 +0.4
254,901 - BWI76_RS01245 0.17 +0.2
255,222 - BWI76_RS01245 0.34 -0.2

Or see this region's nucleotide sequence