Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20255 and ABZR87_RS20260 overlap by 4 nucleotides ABZR87_RS20260 and ABZR87_RS20265 are separated by 70 nucleotides ABZR87_RS20265 and ABZR87_RS20270 are separated by 29 nucleotides ABZR87_RS20270 and ABZR87_RS20275 are separated by 12 nucleotides
ABZR87_RS20255: ABZR87_RS20255 - type VI secretion system baseplate subunit TssK, at 930,533 to 931,879
_RS20255
ABZR87_RS20260: ABZR87_RS20260 - type IVB secretion system protein IcmH/DotU, at 931,876 to 932,661
_RS20260
ABZR87_RS20265: ABZR87_RS20265 - type VI secretion system Vgr family protein, at 932,732 to 935,452
_RS20265
ABZR87_RS20270: ABZR87_RS20270 - hypothetical protein, at 935,482 to 935,865
_RS20270
ABZR87_RS20275: ABZR87_RS20275 - hypothetical protein, at 935,878 to 937,155
_RS20275
Position (kb) 932
933
934
935
936 Strain fitness (log2 ratio) -2
-1
0
1
2 at 931.757 kb on + strand at 931.758 kb on - strand at 931.758 kb on - strand at 931.758 kb on - strand at 931.758 kb on - strand at 931.787 kb on + strand at 931.787 kb on + strand at 931.787 kb on + strand at 931.788 kb on - strand at 931.788 kb on - strand at 931.788 kb on - strand at 931.788 kb on - strand at 931.788 kb on - strand at 931.788 kb on - strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.884 kb on + strand at 931.884 kb on + strand at 931.884 kb on + strand at 931.885 kb on - strand at 931.885 kb on - strand at 931.984 kb on + strand, within ABZR87_RS20260 at 931.984 kb on + strand, within ABZR87_RS20260 at 931.985 kb on - strand, within ABZR87_RS20260 at 931.985 kb on - strand, within ABZR87_RS20260 at 932.108 kb on + strand, within ABZR87_RS20260 at 932.137 kb on + strand, within ABZR87_RS20260 at 932.138 kb on - strand, within ABZR87_RS20260 at 932.138 kb on - strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.387 kb on - strand, within ABZR87_RS20260 at 932.602 kb on + strand at 932.860 kb on + strand at 932.900 kb on - strand at 933.008 kb on + strand, within ABZR87_RS20265 at 933.008 kb on + strand, within ABZR87_RS20265 at 933.009 kb on - strand, within ABZR87_RS20265 at 933.009 kb on - strand, within ABZR87_RS20265 at 933.009 kb on - strand, within ABZR87_RS20265 at 933.165 kb on - strand, within ABZR87_RS20265 at 933.179 kb on + strand, within ABZR87_RS20265 at 933.179 kb on + strand, within ABZR87_RS20265 at 933.180 kb on - strand, within ABZR87_RS20265 at 933.180 kb on - strand, within ABZR87_RS20265 at 933.230 kb on + strand, within ABZR87_RS20265 at 933.231 kb on - strand, within ABZR87_RS20265 at 933.245 kb on + strand, within ABZR87_RS20265 at 933.246 kb on - strand, within ABZR87_RS20265 at 933.246 kb on - strand, within ABZR87_RS20265 at 933.246 kb on - strand, within ABZR87_RS20265 at 933.246 kb on - strand, within ABZR87_RS20265 at 933.509 kb on + strand, within ABZR87_RS20265 at 933.510 kb on - strand, within ABZR87_RS20265 at 933.510 kb on - strand, within ABZR87_RS20265 at 933.510 kb on - strand, within ABZR87_RS20265 at 933.602 kb on + strand, within ABZR87_RS20265 at 933.602 kb on + strand, within ABZR87_RS20265 at 933.602 kb on + strand, within ABZR87_RS20265 at 933.603 kb on - strand, within ABZR87_RS20265 at 933.608 kb on + strand, within ABZR87_RS20265 at 933.609 kb on - strand, within ABZR87_RS20265 at 933.672 kb on - strand, within ABZR87_RS20265 at 933.672 kb on - strand, within ABZR87_RS20265 at 933.681 kb on - strand, within ABZR87_RS20265 at 933.857 kb on + strand, within ABZR87_RS20265 at 933.858 kb on - strand, within ABZR87_RS20265 at 934.310 kb on + strand, within ABZR87_RS20265 at 934.310 kb on + strand, within ABZR87_RS20265 at 934.310 kb on + strand, within ABZR87_RS20265 at 934.311 kb on - strand, within ABZR87_RS20265 at 934.703 kb on + strand, within ABZR87_RS20265 at 934.703 kb on + strand, within ABZR87_RS20265 at 934.703 kb on + strand, within ABZR87_RS20265 at 934.703 kb on + strand, within ABZR87_RS20265 at 934.704 kb on - strand, within ABZR87_RS20265 at 934.704 kb on - strand, within ABZR87_RS20265 at 934.704 kb on - strand, within ABZR87_RS20265 at 934.824 kb on - strand, within ABZR87_RS20265 at 934.982 kb on - strand, within ABZR87_RS20265 at 935.008 kb on + strand, within ABZR87_RS20265 at 935.008 kb on + strand, within ABZR87_RS20265 at 935.009 kb on - strand, within ABZR87_RS20265 at 935.017 kb on + strand, within ABZR87_RS20265 at 935.023 kb on + strand, within ABZR87_RS20265 at 935.220 kb on + strand at 935.220 kb on + strand at 935.220 kb on + strand at 935.220 kb on + strand at 935.220 kb on + strand at 935.220 kb on + strand at 935.220 kb on + strand at 935.221 kb on - strand at 935.221 kb on - strand at 935.221 kb on - strand at 935.221 kb on - strand at 935.221 kb on - strand at 935.221 kb on - strand at 935.285 kb on + strand at 935.286 kb on - strand at 935.329 kb on + strand at 935.329 kb on + strand at 935.330 kb on - strand at 935.330 kb on - strand at 935.345 kb on - strand at 935.387 kb on + strand at 935.387 kb on + strand at 935.387 kb on + strand at 935.387 kb on + strand at 935.387 kb on + strand at 935.387 kb on + strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.426 kb on - strand at 935.426 kb on - strand at 935.450 kb on + strand at 935.451 kb on - strand at 935.451 kb on - strand at 935.458 kb on + strand at 935.458 kb on + strand at 935.459 kb on - strand at 935.459 kb on - strand at 935.515 kb on - strand at 935.536 kb on + strand, within ABZR87_RS20270 at 935.536 kb on + strand, within ABZR87_RS20270 at 935.536 kb on + strand, within ABZR87_RS20270 at 935.537 kb on - strand, within ABZR87_RS20270 at 935.537 kb on - strand, within ABZR87_RS20270 at 935.562 kb on + strand, within ABZR87_RS20270 at 935.562 kb on + strand, within ABZR87_RS20270 at 935.562 kb on + strand, within ABZR87_RS20270 at 935.563 kb on - strand, within ABZR87_RS20270 at 935.563 kb on - strand, within ABZR87_RS20270 at 935.583 kb on + strand, within ABZR87_RS20270 at 935.583 kb on + strand, within ABZR87_RS20270 at 935.584 kb on - strand, within ABZR87_RS20270 at 935.584 kb on - strand, within ABZR87_RS20270 at 935.584 kb on - strand, within ABZR87_RS20270 at 935.613 kb on + strand, within ABZR87_RS20270 at 935.727 kb on + strand, within ABZR87_RS20270 at 935.728 kb on - strand, within ABZR87_RS20270 at 935.820 kb on + strand, within ABZR87_RS20270 at 935.820 kb on + strand, within ABZR87_RS20270 at 935.820 kb on + strand, within ABZR87_RS20270 at 935.821 kb on - strand, within ABZR87_RS20270 at 935.821 kb on - strand, within ABZR87_RS20270 at 935.821 kb on - strand, within ABZR87_RS20270 at 935.821 kb on - strand, within ABZR87_RS20270 at 935.940 kb on + strand at 935.940 kb on + strand at 935.941 kb on - strand at 935.941 kb on - strand at 935.941 kb on - strand at 935.975 kb on - strand at 935.988 kb on - strand at 935.988 kb on - strand at 935.993 kb on + strand at 935.993 kb on + strand at 935.993 kb on + strand at 935.994 kb on - strand at 935.994 kb on - strand at 935.994 kb on - strand at 936.019 kb on - strand, within ABZR87_RS20275 at 936.019 kb on - strand, within ABZR87_RS20275 at 936.040 kb on + strand, within ABZR87_RS20275 at 936.108 kb on + strand, within ABZR87_RS20275 at 936.108 kb on + strand, within ABZR87_RS20275 at 936.108 kb on + strand, within ABZR87_RS20275 at 936.108 kb on + strand, within ABZR87_RS20275 at 936.108 kb on + strand, within ABZR87_RS20275 at 936.109 kb on - strand, within ABZR87_RS20275 at 936.109 kb on - strand, within ABZR87_RS20275 at 936.109 kb on - strand, within ABZR87_RS20275 at 936.109 kb on - strand, within ABZR87_RS20275 at 936.163 kb on + strand, within ABZR87_RS20275 at 936.164 kb on - strand, within ABZR87_RS20275 at 936.164 kb on - strand, within ABZR87_RS20275 at 936.168 kb on + strand, within ABZR87_RS20275 at 936.183 kb on - strand, within ABZR87_RS20275 at 936.201 kb on + strand, within ABZR87_RS20275 at 936.201 kb on + strand, within ABZR87_RS20275 at 936.201 kb on + strand, within ABZR87_RS20275 at 936.201 kb on + strand, within ABZR87_RS20275 at 936.202 kb on - strand, within ABZR87_RS20275 at 936.202 kb on - strand, within ABZR87_RS20275 at 936.202 kb on - strand, within ABZR87_RS20275 at 936.218 kb on - strand, within ABZR87_RS20275 at 936.257 kb on + strand, within ABZR87_RS20275 at 936.257 kb on + strand, within ABZR87_RS20275 at 936.258 kb on - strand, within ABZR87_RS20275 at 936.258 kb on - strand, within ABZR87_RS20275 at 936.258 kb on - strand, within ABZR87_RS20275 at 936.272 kb on - strand, within ABZR87_RS20275 at 936.358 kb on + strand, within ABZR87_RS20275 at 936.359 kb on - strand, within ABZR87_RS20275 at 936.376 kb on - strand, within ABZR87_RS20275
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 931,757 + -0.4 931,758 - -0.3 931,758 - -0.3 931,758 - +0.2 931,758 - -0.2 931,787 + +0.0 931,787 + +0.2 931,787 + +0.2 931,788 - +1.1 931,788 - +0.8 931,788 - -0.5 931,788 - +0.6 931,788 - +0.4 931,788 - -1.1 931,823 + +1.2 931,823 + +0.2 931,823 + -0.5 931,823 + -0.4 931,823 + -0.1 931,823 + +1.6 931,823 + -0.1 931,823 + -0.2 931,823 + +0.2 931,824 - +0.4 931,824 - +0.3 931,824 - -1.7 931,824 - +0.3 931,824 - -0.4 931,824 - -0.2 931,824 - +1.4 931,824 - -0.3 931,884 + -0.3 931,884 + -1.1 931,884 + +0.1 931,885 - -0.4 931,885 - -0.2 931,984 + ABZR87_RS20260 0.14 +0.4 931,984 + ABZR87_RS20260 0.14 +1.4 931,985 - ABZR87_RS20260 0.14 -0.6 931,985 - ABZR87_RS20260 0.14 -0.1 932,108 + ABZR87_RS20260 0.30 +0.0 932,137 + ABZR87_RS20260 0.33 +0.1 932,138 - ABZR87_RS20260 0.33 +0.6 932,138 - ABZR87_RS20260 0.33 -1.0 932,356 + ABZR87_RS20260 0.61 +0.2 932,356 + ABZR87_RS20260 0.61 -1.1 932,356 + ABZR87_RS20260 0.61 +0.8 932,356 + ABZR87_RS20260 0.61 +0.0 932,356 + ABZR87_RS20260 0.61 -0.4 932,356 + ABZR87_RS20260 0.61 +0.0 932,356 + ABZR87_RS20260 0.61 +0.2 932,356 + ABZR87_RS20260 0.61 -0.3 932,357 - ABZR87_RS20260 0.61 -1.0 932,357 - ABZR87_RS20260 0.61 +0.1 932,357 - ABZR87_RS20260 0.61 -0.2 932,357 - ABZR87_RS20260 0.61 +0.5 932,357 - ABZR87_RS20260 0.61 -0.4 932,357 - ABZR87_RS20260 0.61 -0.9 932,357 - ABZR87_RS20260 0.61 -0.3 932,387 - ABZR87_RS20260 0.65 -0.3 932,602 + +1.0 932,860 + -1.2 932,900 - -0.7 933,008 + ABZR87_RS20265 0.10 -1.1 933,008 + ABZR87_RS20265 0.10 +0.0 933,009 - ABZR87_RS20265 0.10 -0.5 933,009 - ABZR87_RS20265 0.10 -0.6 933,009 - ABZR87_RS20265 0.10 -0.2 933,165 - ABZR87_RS20265 0.16 -0.9 933,179 + ABZR87_RS20265 0.16 -0.9 933,179 + ABZR87_RS20265 0.16 +0.3 933,180 - ABZR87_RS20265 0.16 -0.4 933,180 - ABZR87_RS20265 0.16 -1.1 933,230 + ABZR87_RS20265 0.18 -0.6 933,231 - ABZR87_RS20265 0.18 -0.3 933,245 + ABZR87_RS20265 0.19 -0.0 933,246 - ABZR87_RS20265 0.19 -0.8 933,246 - ABZR87_RS20265 0.19 -0.7 933,246 - ABZR87_RS20265 0.19 -0.2 933,246 - ABZR87_RS20265 0.19 +0.8 933,509 + ABZR87_RS20265 0.29 -0.9 933,510 - ABZR87_RS20265 0.29 +0.3 933,510 - ABZR87_RS20265 0.29 -0.6 933,510 - ABZR87_RS20265 0.29 -0.9 933,602 + ABZR87_RS20265 0.32 +0.0 933,602 + ABZR87_RS20265 0.32 +0.7 933,602 + ABZR87_RS20265 0.32 -0.3 933,603 - ABZR87_RS20265 0.32 -0.7 933,608 + ABZR87_RS20265 0.32 +0.3 933,609 - ABZR87_RS20265 0.32 -0.6 933,672 - ABZR87_RS20265 0.35 -0.2 933,672 - ABZR87_RS20265 0.35 +2.0 933,681 - ABZR87_RS20265 0.35 -0.6 933,857 + ABZR87_RS20265 0.41 +0.5 933,858 - ABZR87_RS20265 0.41 -1.2 934,310 + ABZR87_RS20265 0.58 +0.0 934,310 + ABZR87_RS20265 0.58 -0.1 934,310 + ABZR87_RS20265 0.58 +0.0 934,311 - ABZR87_RS20265 0.58 -0.0 934,703 + ABZR87_RS20265 0.72 +0.2 934,703 + ABZR87_RS20265 0.72 -0.1 934,703 + ABZR87_RS20265 0.72 +0.1 934,703 + ABZR87_RS20265 0.72 +0.5 934,704 - ABZR87_RS20265 0.72 +0.0 934,704 - ABZR87_RS20265 0.72 -0.1 934,704 - ABZR87_RS20265 0.72 +0.3 934,824 - ABZR87_RS20265 0.77 +0.2 934,982 - ABZR87_RS20265 0.83 -0.4 935,008 + ABZR87_RS20265 0.84 +0.7 935,008 + ABZR87_RS20265 0.84 -0.8 935,009 - ABZR87_RS20265 0.84 -0.0 935,017 + ABZR87_RS20265 0.84 -0.8 935,023 + ABZR87_RS20265 0.84 -0.9 935,220 + +0.7 935,220 + +0.6 935,220 + -1.7 935,220 + -0.0 935,220 + +1.4 935,220 + +0.8 935,220 + -0.9 935,221 - -0.5 935,221 - -1.2 935,221 - -0.5 935,221 - +0.4 935,221 - -0.0 935,221 - -0.9 935,285 + -0.6 935,286 - -1.3 935,329 + -0.5 935,329 + +0.0 935,330 - +0.0 935,330 - -0.3 935,345 - +0.2 935,387 + -0.2 935,387 + +1.4 935,387 + -0.3 935,387 + -1.0 935,387 + -0.2 935,387 + -0.4 935,388 - -0.8 935,388 - +0.4 935,426 - +0.3 935,426 - -0.8 935,450 + +0.7 935,451 - +0.1 935,451 - +0.2 935,458 + -0.4 935,458 + -1.2 935,459 - -0.4 935,459 - -0.9 935,515 - -1.9 935,536 + ABZR87_RS20270 0.14 -0.2 935,536 + ABZR87_RS20270 0.14 -0.0 935,536 + ABZR87_RS20270 0.14 -1.4 935,537 - ABZR87_RS20270 0.14 +0.0 935,537 - ABZR87_RS20270 0.14 -2.4 935,562 + ABZR87_RS20270 0.21 +1.1 935,562 + ABZR87_RS20270 0.21 +0.3 935,562 + ABZR87_RS20270 0.21 -0.1 935,563 - ABZR87_RS20270 0.21 -0.6 935,563 - ABZR87_RS20270 0.21 +1.2 935,583 + ABZR87_RS20270 0.26 -0.3 935,583 + ABZR87_RS20270 0.26 +0.0 935,584 - ABZR87_RS20270 0.27 +0.1 935,584 - ABZR87_RS20270 0.27 -1.0 935,584 - ABZR87_RS20270 0.27 -0.5 935,613 + ABZR87_RS20270 0.34 +0.0 935,727 + ABZR87_RS20270 0.64 +0.1 935,728 - ABZR87_RS20270 0.64 +0.3 935,820 + ABZR87_RS20270 0.88 +0.1 935,820 + ABZR87_RS20270 0.88 -0.4 935,820 + ABZR87_RS20270 0.88 +0.6 935,821 - ABZR87_RS20270 0.88 -0.0 935,821 - ABZR87_RS20270 0.88 -0.5 935,821 - ABZR87_RS20270 0.88 -0.4 935,821 - ABZR87_RS20270 0.88 -0.4 935,940 + +0.4 935,940 + -0.5 935,941 - +1.0 935,941 - -1.1 935,941 - -0.9 935,975 - -0.9 935,988 - -0.2 935,988 - -0.5 935,993 + +1.0 935,993 + -0.4 935,993 + +0.5 935,994 - -0.9 935,994 - -1.3 935,994 - -1.3 936,019 - ABZR87_RS20275 0.11 -1.2 936,019 - ABZR87_RS20275 0.11 -0.2 936,040 + ABZR87_RS20275 0.13 +0.6 936,108 + ABZR87_RS20275 0.18 +0.0 936,108 + ABZR87_RS20275 0.18 +0.2 936,108 + ABZR87_RS20275 0.18 +0.4 936,108 + ABZR87_RS20275 0.18 +0.0 936,108 + ABZR87_RS20275 0.18 -0.7 936,109 - ABZR87_RS20275 0.18 -1.0 936,109 - ABZR87_RS20275 0.18 -0.6 936,109 - ABZR87_RS20275 0.18 -0.3 936,109 - ABZR87_RS20275 0.18 -0.9 936,163 + ABZR87_RS20275 0.22 -0.9 936,164 - ABZR87_RS20275 0.22 -0.2 936,164 - ABZR87_RS20275 0.22 -1.2 936,168 + ABZR87_RS20275 0.23 +0.2 936,183 - ABZR87_RS20275 0.24 -0.5 936,201 + ABZR87_RS20275 0.25 -0.2 936,201 + ABZR87_RS20275 0.25 +1.1 936,201 + ABZR87_RS20275 0.25 +0.9 936,201 + ABZR87_RS20275 0.25 +0.0 936,202 - ABZR87_RS20275 0.25 -1.5 936,202 - ABZR87_RS20275 0.25 +0.4 936,202 - ABZR87_RS20275 0.25 -0.4 936,218 - ABZR87_RS20275 0.27 +0.2 936,257 + ABZR87_RS20275 0.30 -0.6 936,257 + ABZR87_RS20275 0.30 +0.3 936,258 - ABZR87_RS20275 0.30 -0.0 936,258 - ABZR87_RS20275 0.30 -0.6 936,258 - ABZR87_RS20275 0.30 +0.3 936,272 - ABZR87_RS20275 0.31 -1.1 936,358 + ABZR87_RS20275 0.38 +0.7 936,359 - ABZR87_RS20275 0.38 -0.3 936,376 - ABZR87_RS20275 0.39 -0.1
Or see this region's nucleotide sequence