Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18155

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18150 and ABZR87_RS18155 are separated by 8 nucleotidesABZR87_RS18155 and ABZR87_RS18160 are separated by 436 nucleotides ABZR87_RS18150: ABZR87_RS18150 - LuxR family transcriptional regulator, at 435,220 to 436,107 _RS18150 ABZR87_RS18155: ABZR87_RS18155 - LysR family transcriptional regulator, at 436,116 to 437,231 _RS18155 ABZR87_RS18160: ABZR87_RS18160 - hypothetical protein, at 437,668 to 439,149 _RS18160 Position (kb) 436 437 438Strain fitness (log2 ratio) -1 0 1 2at 435.168 kb on + strandat 435.168 kb on + strandat 435.169 kb on + strandat 435.185 kb on - strandat 435.185 kb on - strandat 435.238 kb on - strandat 435.425 kb on - strand, within ABZR87_RS18150at 435.484 kb on + strand, within ABZR87_RS18150at 435.541 kb on + strand, within ABZR87_RS18150at 435.542 kb on - strand, within ABZR87_RS18150at 435.568 kb on + strand, within ABZR87_RS18150at 435.568 kb on + strand, within ABZR87_RS18150at 435.583 kb on + strand, within ABZR87_RS18150at 435.583 kb on + strand, within ABZR87_RS18150at 435.584 kb on - strand, within ABZR87_RS18150at 435.748 kb on + strand, within ABZR87_RS18150at 435.748 kb on + strand, within ABZR87_RS18150at 435.749 kb on - strand, within ABZR87_RS18150at 435.749 kb on - strand, within ABZR87_RS18150at 435.749 kb on - strand, within ABZR87_RS18150at 435.878 kb on - strand, within ABZR87_RS18150at 435.889 kb on + strand, within ABZR87_RS18150at 436.031 kb on - strandat 436.100 kb on - strandat 436.106 kb on - strandat 436.192 kb on - strandat 436.192 kb on - strandat 436.299 kb on - strand, within ABZR87_RS18155at 436.361 kb on - strand, within ABZR87_RS18155at 436.433 kb on + strand, within ABZR87_RS18155at 436.433 kb on + strand, within ABZR87_RS18155at 436.434 kb on - strand, within ABZR87_RS18155at 436.895 kb on + strand, within ABZR87_RS18155at 436.895 kb on + strand, within ABZR87_RS18155at 436.895 kb on + strand, within ABZR87_RS18155at 436.895 kb on + strand, within ABZR87_RS18155at 436.896 kb on - strand, within ABZR87_RS18155at 436.896 kb on - strand, within ABZR87_RS18155at 436.897 kb on + strand, within ABZR87_RS18155at 436.897 kb on + strand, within ABZR87_RS18155at 436.898 kb on - strand, within ABZR87_RS18155at 437.153 kb on + strandat 437.153 kb on + strandat 437.153 kb on + strandat 437.153 kb on + strandat 437.154 kb on - strandat 437.154 kb on - strandat 437.154 kb on - strandat 437.154 kb on - strandat 437.237 kb on + strandat 437.237 kb on + strandat 437.238 kb on - strandat 437.238 kb on - strandat 437.272 kb on + strandat 437.273 kb on - strandat 437.277 kb on + strandat 437.277 kb on + strandat 437.277 kb on + strandat 437.278 kb on - strandat 437.278 kb on - strandat 437.278 kb on - strandat 437.278 kb on - strandat 437.278 kb on - strandat 437.278 kb on - strandat 437.447 kb on + strandat 437.447 kb on + strandat 437.448 kb on - strandat 437.448 kb on - strandat 437.448 kb on - strandat 437.451 kb on + strandat 437.451 kb on + strandat 437.452 kb on - strandat 437.466 kb on + strandat 437.597 kb on + strandat 437.598 kb on - strandat 437.623 kb on + strandat 437.624 kb on - strandat 437.846 kb on - strand, within ABZR87_RS18160at 437.846 kb on - strand, within ABZR87_RS18160at 437.875 kb on + strand, within ABZR87_RS18160at 437.876 kb on - strand, within ABZR87_RS18160at 437.965 kb on + strand, within ABZR87_RS18160at 437.965 kb on + strand, within ABZR87_RS18160at 437.965 kb on + strand, within ABZR87_RS18160at 437.966 kb on - strand, within ABZR87_RS18160at 437.966 kb on - strand, within ABZR87_RS18160at 437.966 kb on - strand, within ABZR87_RS18160at 437.967 kb on + strand, within ABZR87_RS18160at 437.967 kb on + strand, within ABZR87_RS18160at 438.074 kb on - strand, within ABZR87_RS18160at 438.074 kb on - strand, within ABZR87_RS18160at 438.220 kb on + strand, within ABZR87_RS18160

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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435,168 + +0.5
435,168 + +0.8
435,169 + -0.1
435,185 - -0.0
435,185 - +0.2
435,238 - +0.3
435,425 - ABZR87_RS18150 0.23 -0.2
435,484 + ABZR87_RS18150 0.30 +0.4
435,541 + ABZR87_RS18150 0.36 +0.8
435,542 - ABZR87_RS18150 0.36 -1.0
435,568 + ABZR87_RS18150 0.39 -0.1
435,568 + ABZR87_RS18150 0.39 -0.7
435,583 + ABZR87_RS18150 0.41 +0.3
435,583 + ABZR87_RS18150 0.41 +0.7
435,584 - ABZR87_RS18150 0.41 +0.9
435,748 + ABZR87_RS18150 0.59 -0.2
435,748 + ABZR87_RS18150 0.59 +0.5
435,749 - ABZR87_RS18150 0.60 +0.5
435,749 - ABZR87_RS18150 0.60 +0.1
435,749 - ABZR87_RS18150 0.60 +0.0
435,878 - ABZR87_RS18150 0.74 +0.1
435,889 + ABZR87_RS18150 0.75 -1.0
436,031 - -0.7
436,100 - -0.2
436,106 - +0.7
436,192 - +0.3
436,192 - -0.1
436,299 - ABZR87_RS18155 0.16 +0.3
436,361 - ABZR87_RS18155 0.22 +1.6
436,433 + ABZR87_RS18155 0.28 -0.6
436,433 + ABZR87_RS18155 0.28 +0.7
436,434 - ABZR87_RS18155 0.28 +1.3
436,895 + ABZR87_RS18155 0.70 -0.2
436,895 + ABZR87_RS18155 0.70 +0.1
436,895 + ABZR87_RS18155 0.70 -0.3
436,895 + ABZR87_RS18155 0.70 +0.8
436,896 - ABZR87_RS18155 0.70 -0.2
436,896 - ABZR87_RS18155 0.70 +0.3
436,897 + ABZR87_RS18155 0.70 +1.6
436,897 + ABZR87_RS18155 0.70 +0.6
436,898 - ABZR87_RS18155 0.70 +1.6
437,153 + -0.1
437,153 + +0.6
437,153 + -0.2
437,153 + -0.7
437,154 - -0.0
437,154 - +0.2
437,154 - -0.8
437,154 - -0.4
437,237 + -1.4
437,237 + -0.4
437,238 - +0.6
437,238 - -0.1
437,272 + +0.1
437,273 - -0.4
437,277 + +0.3
437,277 + +1.0
437,277 + -0.1
437,278 - -0.5
437,278 - +0.3
437,278 - +0.1
437,278 - +1.0
437,278 - -0.4
437,278 - -0.6
437,447 + +0.3
437,447 + +0.6
437,448 - +2.3
437,448 - +0.7
437,448 - -0.1
437,451 + -0.7
437,451 + +1.2
437,452 - +0.5
437,466 + -0.3
437,597 + -0.1
437,598 - +0.3
437,623 + +0.5
437,624 - +0.1
437,846 - ABZR87_RS18160 0.12 +0.6
437,846 - ABZR87_RS18160 0.12 +0.6
437,875 + ABZR87_RS18160 0.14 +0.3
437,876 - ABZR87_RS18160 0.14 +0.2
437,965 + ABZR87_RS18160 0.20 +0.0
437,965 + ABZR87_RS18160 0.20 -0.5
437,965 + ABZR87_RS18160 0.20 -0.7
437,966 - ABZR87_RS18160 0.20 -0.7
437,966 - ABZR87_RS18160 0.20 -0.0
437,966 - ABZR87_RS18160 0.20 +0.6
437,967 + ABZR87_RS18160 0.20 -0.4
437,967 + ABZR87_RS18160 0.20 -0.0
438,074 - ABZR87_RS18160 0.27 -0.2
438,074 - ABZR87_RS18160 0.27 +0.1
438,220 + ABZR87_RS18160 0.37 -0.3

Or see this region's nucleotide sequence