Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15020

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15010 and ABZR87_RS15015 are separated by 49 nucleotidesABZR87_RS15015 and ABZR87_RS15020 are separated by 34 nucleotidesABZR87_RS15020 and ABZR87_RS15025 are separated by 56 nucleotides ABZR87_RS15010: ABZR87_RS15010 - DUF924 family protein, at 3,164,560 to 3,165,138 _RS15010 ABZR87_RS15015: ABZR87_RS15015 - group II truncated hemoglobin, at 3,165,188 to 3,165,592 _RS15015 ABZR87_RS15020: ABZR87_RS15020 - ABC transporter permease, at 3,165,627 to 3,168,161 _RS15020 ABZR87_RS15025: ABZR87_RS15025 - substrate-binding domain-containing protein, at 3,168,218 to 3,169,318 _RS15025 Position (kb) 3165 3166 3167 3168 3169Strain fitness (log2 ratio) -2 -1 0 1at 3164.688 kb on + strand, within ABZR87_RS15010at 3164.689 kb on - strand, within ABZR87_RS15010at 3164.729 kb on + strand, within ABZR87_RS15010at 3165.155 kb on - strandat 3165.155 kb on - strandat 3165.164 kb on + strandat 3165.165 kb on - strandat 3165.189 kb on + strandat 3165.190 kb on - strandat 3165.340 kb on + strand, within ABZR87_RS15015at 3165.505 kb on - strand, within ABZR87_RS15015at 3165.505 kb on - strand, within ABZR87_RS15015at 3165.505 kb on - strand, within ABZR87_RS15015at 3165.593 kb on - strandat 3165.696 kb on - strandat 3165.696 kb on - strandat 3165.772 kb on + strandat 3165.772 kb on + strandat 3165.772 kb on + strandat 3165.773 kb on - strandat 3165.773 kb on - strandat 3165.857 kb on - strandat 3165.857 kb on - strandat 3165.857 kb on - strandat 3165.870 kb on + strandat 3165.870 kb on + strandat 3165.952 kb on + strand, within ABZR87_RS15020at 3165.953 kb on - strand, within ABZR87_RS15020at 3166.141 kb on + strand, within ABZR87_RS15020at 3166.142 kb on - strand, within ABZR87_RS15020at 3166.397 kb on - strand, within ABZR87_RS15020at 3166.447 kb on + strand, within ABZR87_RS15020at 3166.447 kb on + strand, within ABZR87_RS15020at 3166.448 kb on - strand, within ABZR87_RS15020at 3166.448 kb on - strand, within ABZR87_RS15020at 3166.507 kb on + strand, within ABZR87_RS15020at 3166.619 kb on + strand, within ABZR87_RS15020at 3166.930 kb on + strand, within ABZR87_RS15020at 3166.930 kb on + strand, within ABZR87_RS15020at 3166.931 kb on - strand, within ABZR87_RS15020at 3167.146 kb on + strand, within ABZR87_RS15020at 3167.507 kb on - strand, within ABZR87_RS15020at 3167.507 kb on - strand, within ABZR87_RS15020at 3167.525 kb on - strand, within ABZR87_RS15020at 3167.608 kb on - strand, within ABZR87_RS15020at 3167.659 kb on - strand, within ABZR87_RS15020at 3167.717 kb on + strand, within ABZR87_RS15020at 3167.718 kb on - strand, within ABZR87_RS15020at 3167.929 kb on + strandat 3167.929 kb on + strandat 3167.929 kb on + strandat 3167.930 kb on - strandat 3167.930 kb on - strandat 3168.408 kb on + strand, within ABZR87_RS15025at 3168.409 kb on - strand, within ABZR87_RS15025at 3168.409 kb on - strand, within ABZR87_RS15025at 3168.411 kb on + strand, within ABZR87_RS15025at 3168.411 kb on + strand, within ABZR87_RS15025at 3168.412 kb on - strand, within ABZR87_RS15025at 3168.412 kb on - strand, within ABZR87_RS15025at 3168.544 kb on - strand, within ABZR87_RS15025at 3168.810 kb on + strand, within ABZR87_RS15025at 3168.810 kb on + strand, within ABZR87_RS15025at 3168.810 kb on + strand, within ABZR87_RS15025at 3168.811 kb on - strand, within ABZR87_RS15025at 3168.811 kb on - strand, within ABZR87_RS15025at 3168.811 kb on - strand, within ABZR87_RS15025at 3168.811 kb on - strand, within ABZR87_RS15025at 3168.876 kb on - strand, within ABZR87_RS15025at 3168.876 kb on - strand, within ABZR87_RS15025at 3168.876 kb on - strand, within ABZR87_RS15025at 3168.876 kb on - strand, within ABZR87_RS15025at 3168.877 kb on - strand, within ABZR87_RS15025

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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3,164,688 + ABZR87_RS15010 0.22 +0.8
3,164,689 - ABZR87_RS15010 0.22 -0.1
3,164,729 + ABZR87_RS15010 0.29 +0.7
3,165,155 - -0.5
3,165,155 - -0.5
3,165,164 + +0.5
3,165,165 - +0.2
3,165,189 + -0.5
3,165,190 - -0.7
3,165,340 + ABZR87_RS15015 0.38 +0.9
3,165,505 - ABZR87_RS15015 0.78 -0.1
3,165,505 - ABZR87_RS15015 0.78 +0.6
3,165,505 - ABZR87_RS15015 0.78 -0.1
3,165,593 - -0.8
3,165,696 - -0.0
3,165,696 - -0.2
3,165,772 + +0.1
3,165,772 + -0.4
3,165,772 + +0.4
3,165,773 - +0.6
3,165,773 - -0.8
3,165,857 - +0.2
3,165,857 - +0.3
3,165,857 - +0.0
3,165,870 + +0.4
3,165,870 + -0.5
3,165,952 + ABZR87_RS15020 0.13 -0.9
3,165,953 - ABZR87_RS15020 0.13 -2.0
3,166,141 + ABZR87_RS15020 0.20 +0.1
3,166,142 - ABZR87_RS15020 0.20 -0.7
3,166,397 - ABZR87_RS15020 0.30 +0.0
3,166,447 + ABZR87_RS15020 0.32 -0.3
3,166,447 + ABZR87_RS15020 0.32 -0.5
3,166,448 - ABZR87_RS15020 0.32 +0.4
3,166,448 - ABZR87_RS15020 0.32 -0.5
3,166,507 + ABZR87_RS15020 0.35 +0.2
3,166,619 + ABZR87_RS15020 0.39 +0.0
3,166,930 + ABZR87_RS15020 0.51 -0.1
3,166,930 + ABZR87_RS15020 0.51 +0.1
3,166,931 - ABZR87_RS15020 0.51 -0.5
3,167,146 + ABZR87_RS15020 0.60 -0.4
3,167,507 - ABZR87_RS15020 0.74 +0.1
3,167,507 - ABZR87_RS15020 0.74 -0.4
3,167,525 - ABZR87_RS15020 0.75 +0.1
3,167,608 - ABZR87_RS15020 0.78 +0.3
3,167,659 - ABZR87_RS15020 0.80 -0.6
3,167,717 + ABZR87_RS15020 0.82 -0.0
3,167,718 - ABZR87_RS15020 0.82 +0.1
3,167,929 + +0.9
3,167,929 + +0.3
3,167,929 + -0.3
3,167,930 - +0.2
3,167,930 - +0.5
3,168,408 + ABZR87_RS15025 0.17 +0.8
3,168,409 - ABZR87_RS15025 0.17 -1.6
3,168,409 - ABZR87_RS15025 0.17 +0.4
3,168,411 + ABZR87_RS15025 0.18 -0.7
3,168,411 + ABZR87_RS15025 0.18 -0.5
3,168,412 - ABZR87_RS15025 0.18 +0.3
3,168,412 - ABZR87_RS15025 0.18 +0.5
3,168,544 - ABZR87_RS15025 0.30 +0.5
3,168,810 + ABZR87_RS15025 0.54 +0.2
3,168,810 + ABZR87_RS15025 0.54 +0.4
3,168,810 + ABZR87_RS15025 0.54 +0.7
3,168,811 - ABZR87_RS15025 0.54 -1.6
3,168,811 - ABZR87_RS15025 0.54 +0.7
3,168,811 - ABZR87_RS15025 0.54 +0.1
3,168,811 - ABZR87_RS15025 0.54 +0.9
3,168,876 - ABZR87_RS15025 0.60 +0.0
3,168,876 - ABZR87_RS15025 0.60 -1.4
3,168,876 - ABZR87_RS15025 0.60 -0.4
3,168,876 - ABZR87_RS15025 0.60 +1.2
3,168,877 - ABZR87_RS15025 0.60 -0.0

Or see this region's nucleotide sequence