Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15015

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15005 and ABZR87_RS15010 are separated by 12 nucleotidesABZR87_RS15010 and ABZR87_RS15015 are separated by 49 nucleotidesABZR87_RS15015 and ABZR87_RS15020 are separated by 34 nucleotides ABZR87_RS15005: ABZR87_RS15005 - TIGR00730 family Rossman fold protein, at 3,163,963 to 3,164,547 _RS15005 ABZR87_RS15010: ABZR87_RS15010 - DUF924 family protein, at 3,164,560 to 3,165,138 _RS15010 ABZR87_RS15015: ABZR87_RS15015 - group II truncated hemoglobin, at 3,165,188 to 3,165,592 _RS15015 ABZR87_RS15020: ABZR87_RS15020 - ABC transporter permease, at 3,165,627 to 3,168,161 _RS15020 Position (kb) 3165 3166Strain fitness (log2 ratio) -2 -1 0 1at 3164.188 kb on - strand, within ABZR87_RS15005at 3164.188 kb on - strand, within ABZR87_RS15005at 3164.293 kb on + strand, within ABZR87_RS15005at 3164.293 kb on + strand, within ABZR87_RS15005at 3164.293 kb on + strand, within ABZR87_RS15005at 3164.294 kb on - strand, within ABZR87_RS15005at 3164.294 kb on - strand, within ABZR87_RS15005at 3164.377 kb on + strand, within ABZR87_RS15005at 3164.377 kb on + strand, within ABZR87_RS15005at 3164.545 kb on + strandat 3164.546 kb on - strandat 3164.688 kb on + strand, within ABZR87_RS15010at 3164.689 kb on - strand, within ABZR87_RS15010at 3164.729 kb on + strand, within ABZR87_RS15010at 3165.155 kb on - strandat 3165.155 kb on - strandat 3165.164 kb on + strandat 3165.165 kb on - strandat 3165.189 kb on + strandat 3165.190 kb on - strandat 3165.340 kb on + strand, within ABZR87_RS15015at 3165.505 kb on - strand, within ABZR87_RS15015at 3165.505 kb on - strand, within ABZR87_RS15015at 3165.505 kb on - strand, within ABZR87_RS15015at 3165.593 kb on - strandat 3165.696 kb on - strandat 3165.696 kb on - strandat 3165.772 kb on + strandat 3165.772 kb on + strandat 3165.772 kb on + strandat 3165.773 kb on - strandat 3165.773 kb on - strandat 3165.857 kb on - strandat 3165.857 kb on - strandat 3165.857 kb on - strandat 3165.870 kb on + strandat 3165.870 kb on + strandat 3165.952 kb on + strand, within ABZR87_RS15020at 3165.953 kb on - strand, within ABZR87_RS15020at 3166.141 kb on + strand, within ABZR87_RS15020at 3166.142 kb on - strand, within ABZR87_RS15020at 3166.397 kb on - strand, within ABZR87_RS15020at 3166.447 kb on + strand, within ABZR87_RS15020at 3166.447 kb on + strand, within ABZR87_RS15020at 3166.448 kb on - strand, within ABZR87_RS15020at 3166.448 kb on - strand, within ABZR87_RS15020at 3166.507 kb on + strand, within ABZR87_RS15020

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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3,164,188 - ABZR87_RS15005 0.38 -0.3
3,164,188 - ABZR87_RS15005 0.38 +0.4
3,164,293 + ABZR87_RS15005 0.56 +0.3
3,164,293 + ABZR87_RS15005 0.56 +1.5
3,164,293 + ABZR87_RS15005 0.56 -0.5
3,164,294 - ABZR87_RS15005 0.57 -0.3
3,164,294 - ABZR87_RS15005 0.57 +0.9
3,164,377 + ABZR87_RS15005 0.71 +0.7
3,164,377 + ABZR87_RS15005 0.71 +0.6
3,164,545 + -0.1
3,164,546 - -0.6
3,164,688 + ABZR87_RS15010 0.22 +0.8
3,164,689 - ABZR87_RS15010 0.22 -0.1
3,164,729 + ABZR87_RS15010 0.29 +0.7
3,165,155 - -0.5
3,165,155 - -0.5
3,165,164 + +0.5
3,165,165 - +0.2
3,165,189 + -0.5
3,165,190 - -0.7
3,165,340 + ABZR87_RS15015 0.38 +0.9
3,165,505 - ABZR87_RS15015 0.78 -0.1
3,165,505 - ABZR87_RS15015 0.78 +0.6
3,165,505 - ABZR87_RS15015 0.78 -0.1
3,165,593 - -0.8
3,165,696 - -0.0
3,165,696 - -0.2
3,165,772 + +0.1
3,165,772 + -0.4
3,165,772 + +0.4
3,165,773 - +0.6
3,165,773 - -0.8
3,165,857 - +0.2
3,165,857 - +0.3
3,165,857 - +0.0
3,165,870 + +0.4
3,165,870 + -0.5
3,165,952 + ABZR87_RS15020 0.13 -0.9
3,165,953 - ABZR87_RS15020 0.13 -2.0
3,166,141 + ABZR87_RS15020 0.20 +0.1
3,166,142 - ABZR87_RS15020 0.20 -0.7
3,166,397 - ABZR87_RS15020 0.30 +0.0
3,166,447 + ABZR87_RS15020 0.32 -0.3
3,166,447 + ABZR87_RS15020 0.32 -0.5
3,166,448 - ABZR87_RS15020 0.32 +0.4
3,166,448 - ABZR87_RS15020 0.32 -0.5
3,166,507 + ABZR87_RS15020 0.35 +0.2

Or see this region's nucleotide sequence