Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09860

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09850 and ABZR87_RS09855 are separated by 214 nucleotidesABZR87_RS09855 and ABZR87_RS09860 are separated by 8 nucleotidesABZR87_RS09860 and ABZR87_RS09865 are separated by 66 nucleotidesABZR87_RS09865 and ABZR87_RS09870 are separated by 147 nucleotides ABZR87_RS09850: ABZR87_RS09850 - DUF1993 family protein, at 2,093,875 to 2,094,384 _RS09850 ABZR87_RS09855: ABZR87_RS09855 - tetratricopeptide repeat protein, at 2,094,599 to 2,095,357 _RS09855 ABZR87_RS09860: ABZR87_RS09860 - spermidine synthase, at 2,095,366 to 2,096,241 _RS09860 ABZR87_RS09865: ABZR87_RS09865 - nuclear transport factor 2 family protein, at 2,096,308 to 2,096,706 _RS09865 ABZR87_RS09870: ABZR87_RS09870 - VWA domain-containing protein, at 2,096,854 to 2,098,029 _RS09870 Position (kb) 2095 2096 2097Strain fitness (log2 ratio) -1 0 1at 2094.680 kb on + strand, within ABZR87_RS09855at 2094.680 kb on + strand, within ABZR87_RS09855at 2094.680 kb on + strand, within ABZR87_RS09855at 2094.681 kb on - strand, within ABZR87_RS09855at 2094.681 kb on - strand, within ABZR87_RS09855at 2094.743 kb on + strand, within ABZR87_RS09855at 2094.744 kb on - strand, within ABZR87_RS09855at 2095.097 kb on + strand, within ABZR87_RS09855at 2095.097 kb on + strand, within ABZR87_RS09855at 2095.097 kb on + strand, within ABZR87_RS09855at 2095.098 kb on - strand, within ABZR87_RS09855at 2095.098 kb on - strand, within ABZR87_RS09855at 2095.098 kb on - strand, within ABZR87_RS09855at 2095.098 kb on - strand, within ABZR87_RS09855at 2095.365 kb on + strandat 2095.384 kb on - strandat 2095.592 kb on - strand, within ABZR87_RS09860at 2095.592 kb on - strand, within ABZR87_RS09860at 2095.825 kb on + strand, within ABZR87_RS09860at 2095.885 kb on + strand, within ABZR87_RS09860at 2095.885 kb on + strand, within ABZR87_RS09860at 2095.885 kb on + strand, within ABZR87_RS09860at 2095.886 kb on - strand, within ABZR87_RS09860at 2095.930 kb on + strand, within ABZR87_RS09860at 2095.930 kb on + strand, within ABZR87_RS09860at 2095.931 kb on - strand, within ABZR87_RS09860at 2095.931 kb on - strand, within ABZR87_RS09860at 2096.384 kb on - strand, within ABZR87_RS09865at 2096.395 kb on - strand, within ABZR87_RS09865at 2096.570 kb on + strand, within ABZR87_RS09865at 2096.570 kb on + strand, within ABZR87_RS09865at 2096.570 kb on + strand, within ABZR87_RS09865at 2096.570 kb on + strand, within ABZR87_RS09865at 2096.570 kb on + strand, within ABZR87_RS09865at 2096.571 kb on - strand, within ABZR87_RS09865at 2096.571 kb on - strand, within ABZR87_RS09865at 2096.571 kb on - strand, within ABZR87_RS09865at 2096.571 kb on - strand, within ABZR87_RS09865at 2096.648 kb on + strand, within ABZR87_RS09865at 2096.802 kb on + strandat 2096.803 kb on - strandat 2096.814 kb on - strandat 2096.855 kb on + strandat 2096.906 kb on + strandat 2096.907 kb on - strandat 2096.907 kb on - strandat 2096.954 kb on + strandat 2097.053 kb on + strand, within ABZR87_RS09870at 2097.086 kb on + strand, within ABZR87_RS09870at 2097.126 kb on - strand, within ABZR87_RS09870at 2097.137 kb on + strand, within ABZR87_RS09870at 2097.138 kb on - strand, within ABZR87_RS09870at 2097.227 kb on + strand, within ABZR87_RS09870at 2097.227 kb on + strand, within ABZR87_RS09870at 2097.227 kb on + strand, within ABZR87_RS09870at 2097.227 kb on + strand, within ABZR87_RS09870at 2097.227 kb on + strand, within ABZR87_RS09870at 2097.228 kb on - strand, within ABZR87_RS09870at 2097.230 kb on + strand, within ABZR87_RS09870at 2097.230 kb on + strand, within ABZR87_RS09870at 2097.233 kb on + strand, within ABZR87_RS09870at 2097.234 kb on - strand, within ABZR87_RS09870

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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2,094,680 + ABZR87_RS09855 0.11 -0.7
2,094,680 + ABZR87_RS09855 0.11 -0.1
2,094,680 + ABZR87_RS09855 0.11 -0.5
2,094,681 - ABZR87_RS09855 0.11 +0.1
2,094,681 - ABZR87_RS09855 0.11 +0.6
2,094,743 + ABZR87_RS09855 0.19 +1.6
2,094,744 - ABZR87_RS09855 0.19 +0.7
2,095,097 + ABZR87_RS09855 0.66 +1.3
2,095,097 + ABZR87_RS09855 0.66 +1.0
2,095,097 + ABZR87_RS09855 0.66 +0.3
2,095,098 - ABZR87_RS09855 0.66 +0.6
2,095,098 - ABZR87_RS09855 0.66 -0.3
2,095,098 - ABZR87_RS09855 0.66 -0.4
2,095,098 - ABZR87_RS09855 0.66 +0.3
2,095,365 + -0.4
2,095,384 - +0.3
2,095,592 - ABZR87_RS09860 0.26 +0.6
2,095,592 - ABZR87_RS09860 0.26 +0.5
2,095,825 + ABZR87_RS09860 0.52 +1.3
2,095,885 + ABZR87_RS09860 0.59 -0.6
2,095,885 + ABZR87_RS09860 0.59 +0.6
2,095,885 + ABZR87_RS09860 0.59 +0.7
2,095,886 - ABZR87_RS09860 0.59 -0.1
2,095,930 + ABZR87_RS09860 0.64 -0.3
2,095,930 + ABZR87_RS09860 0.64 -0.2
2,095,931 - ABZR87_RS09860 0.64 -0.1
2,095,931 - ABZR87_RS09860 0.64 +1.5
2,096,384 - ABZR87_RS09865 0.19 +0.6
2,096,395 - ABZR87_RS09865 0.22 -0.1
2,096,570 + ABZR87_RS09865 0.66 -0.9
2,096,570 + ABZR87_RS09865 0.66 +0.2
2,096,570 + ABZR87_RS09865 0.66 -1.1
2,096,570 + ABZR87_RS09865 0.66 -0.9
2,096,570 + ABZR87_RS09865 0.66 +0.4
2,096,571 - ABZR87_RS09865 0.66 +0.4
2,096,571 - ABZR87_RS09865 0.66 -0.3
2,096,571 - ABZR87_RS09865 0.66 +0.3
2,096,571 - ABZR87_RS09865 0.66 +0.0
2,096,648 + ABZR87_RS09865 0.85 +0.4
2,096,802 + -0.4
2,096,803 - -0.8
2,096,814 - -0.5
2,096,855 + +0.5
2,096,906 + -0.3
2,096,907 - +0.8
2,096,907 - -0.4
2,096,954 + -1.1
2,097,053 + ABZR87_RS09870 0.17 +0.3
2,097,086 + ABZR87_RS09870 0.20 +0.2
2,097,126 - ABZR87_RS09870 0.23 -0.5
2,097,137 + ABZR87_RS09870 0.24 +1.0
2,097,138 - ABZR87_RS09870 0.24 -1.2
2,097,227 + ABZR87_RS09870 0.32 +0.5
2,097,227 + ABZR87_RS09870 0.32 -0.3
2,097,227 + ABZR87_RS09870 0.32 -0.0
2,097,227 + ABZR87_RS09870 0.32 +0.5
2,097,227 + ABZR87_RS09870 0.32 -0.1
2,097,228 - ABZR87_RS09870 0.32 -0.4
2,097,230 + ABZR87_RS09870 0.32 +0.2
2,097,230 + ABZR87_RS09870 0.32 +0.3
2,097,233 + ABZR87_RS09870 0.32 +0.3
2,097,234 - ABZR87_RS09870 0.32 +0.3

Or see this region's nucleotide sequence