Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09850 and ABZR87_RS09855 are separated by 214 nucleotides ABZR87_RS09855 and ABZR87_RS09860 are separated by 8 nucleotides ABZR87_RS09860 and ABZR87_RS09865 are separated by 66 nucleotides ABZR87_RS09865 and ABZR87_RS09870 are separated by 147 nucleotides
ABZR87_RS09850: ABZR87_RS09850 - DUF1993 family protein, at 2,093,875 to 2,094,384
_RS09850
ABZR87_RS09855: ABZR87_RS09855 - tetratricopeptide repeat protein, at 2,094,599 to 2,095,357
_RS09855
ABZR87_RS09860: ABZR87_RS09860 - spermidine synthase, at 2,095,366 to 2,096,241
_RS09860
ABZR87_RS09865: ABZR87_RS09865 - nuclear transport factor 2 family protein, at 2,096,308 to 2,096,706
_RS09865
ABZR87_RS09870: ABZR87_RS09870 - VWA domain-containing protein, at 2,096,854 to 2,098,029
_RS09870
Position (kb)
2095
2096
2097 Strain fitness (log2 ratio)
-1
0
1 at 2094.680 kb on + strand, within ABZR87_RS09855 at 2094.680 kb on + strand, within ABZR87_RS09855 at 2094.680 kb on + strand, within ABZR87_RS09855 at 2094.681 kb on - strand, within ABZR87_RS09855 at 2094.681 kb on - strand, within ABZR87_RS09855 at 2094.743 kb on + strand, within ABZR87_RS09855 at 2094.744 kb on - strand, within ABZR87_RS09855 at 2095.097 kb on + strand, within ABZR87_RS09855 at 2095.097 kb on + strand, within ABZR87_RS09855 at 2095.097 kb on + strand, within ABZR87_RS09855 at 2095.098 kb on - strand, within ABZR87_RS09855 at 2095.098 kb on - strand, within ABZR87_RS09855 at 2095.098 kb on - strand, within ABZR87_RS09855 at 2095.098 kb on - strand, within ABZR87_RS09855 at 2095.365 kb on + strand at 2095.384 kb on - strand at 2095.592 kb on - strand, within ABZR87_RS09860 at 2095.592 kb on - strand, within ABZR87_RS09860 at 2095.825 kb on + strand, within ABZR87_RS09860 at 2095.885 kb on + strand, within ABZR87_RS09860 at 2095.885 kb on + strand, within ABZR87_RS09860 at 2095.885 kb on + strand, within ABZR87_RS09860 at 2095.886 kb on - strand, within ABZR87_RS09860 at 2095.930 kb on + strand, within ABZR87_RS09860 at 2095.930 kb on + strand, within ABZR87_RS09860 at 2095.931 kb on - strand, within ABZR87_RS09860 at 2095.931 kb on - strand, within ABZR87_RS09860 at 2096.384 kb on - strand, within ABZR87_RS09865 at 2096.395 kb on - strand, within ABZR87_RS09865 at 2096.570 kb on + strand, within ABZR87_RS09865 at 2096.570 kb on + strand, within ABZR87_RS09865 at 2096.570 kb on + strand, within ABZR87_RS09865 at 2096.570 kb on + strand, within ABZR87_RS09865 at 2096.570 kb on + strand, within ABZR87_RS09865 at 2096.571 kb on - strand, within ABZR87_RS09865 at 2096.571 kb on - strand, within ABZR87_RS09865 at 2096.571 kb on - strand, within ABZR87_RS09865 at 2096.571 kb on - strand, within ABZR87_RS09865 at 2096.648 kb on + strand, within ABZR87_RS09865 at 2096.802 kb on + strand at 2096.803 kb on - strand at 2096.814 kb on - strand at 2096.855 kb on + strand at 2096.906 kb on + strand at 2096.907 kb on - strand at 2096.907 kb on - strand at 2096.954 kb on + strand at 2097.053 kb on + strand, within ABZR87_RS09870 at 2097.086 kb on + strand, within ABZR87_RS09870 at 2097.126 kb on - strand, within ABZR87_RS09870 at 2097.137 kb on + strand, within ABZR87_RS09870 at 2097.138 kb on - strand, within ABZR87_RS09870 at 2097.227 kb on + strand, within ABZR87_RS09870 at 2097.227 kb on + strand, within ABZR87_RS09870 at 2097.227 kb on + strand, within ABZR87_RS09870 at 2097.227 kb on + strand, within ABZR87_RS09870 at 2097.227 kb on + strand, within ABZR87_RS09870 at 2097.228 kb on - strand, within ABZR87_RS09870 at 2097.230 kb on + strand, within ABZR87_RS09870 at 2097.230 kb on + strand, within ABZR87_RS09870 at 2097.233 kb on + strand, within ABZR87_RS09870 at 2097.234 kb on - strand, within ABZR87_RS09870
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 2,094,680 + ABZR87_RS09855 0.11 -0.7 2,094,680 + ABZR87_RS09855 0.11 -0.1 2,094,680 + ABZR87_RS09855 0.11 -0.5 2,094,681 - ABZR87_RS09855 0.11 +0.1 2,094,681 - ABZR87_RS09855 0.11 +0.6 2,094,743 + ABZR87_RS09855 0.19 +1.6 2,094,744 - ABZR87_RS09855 0.19 +0.7 2,095,097 + ABZR87_RS09855 0.66 +1.3 2,095,097 + ABZR87_RS09855 0.66 +1.0 2,095,097 + ABZR87_RS09855 0.66 +0.3 2,095,098 - ABZR87_RS09855 0.66 +0.6 2,095,098 - ABZR87_RS09855 0.66 -0.3 2,095,098 - ABZR87_RS09855 0.66 -0.4 2,095,098 - ABZR87_RS09855 0.66 +0.3 2,095,365 + -0.4 2,095,384 - +0.3 2,095,592 - ABZR87_RS09860 0.26 +0.6 2,095,592 - ABZR87_RS09860 0.26 +0.5 2,095,825 + ABZR87_RS09860 0.52 +1.3 2,095,885 + ABZR87_RS09860 0.59 -0.6 2,095,885 + ABZR87_RS09860 0.59 +0.6 2,095,885 + ABZR87_RS09860 0.59 +0.7 2,095,886 - ABZR87_RS09860 0.59 -0.1 2,095,930 + ABZR87_RS09860 0.64 -0.3 2,095,930 + ABZR87_RS09860 0.64 -0.2 2,095,931 - ABZR87_RS09860 0.64 -0.1 2,095,931 - ABZR87_RS09860 0.64 +1.5 2,096,384 - ABZR87_RS09865 0.19 +0.6 2,096,395 - ABZR87_RS09865 0.22 -0.1 2,096,570 + ABZR87_RS09865 0.66 -0.9 2,096,570 + ABZR87_RS09865 0.66 +0.2 2,096,570 + ABZR87_RS09865 0.66 -1.1 2,096,570 + ABZR87_RS09865 0.66 -0.9 2,096,570 + ABZR87_RS09865 0.66 +0.4 2,096,571 - ABZR87_RS09865 0.66 +0.4 2,096,571 - ABZR87_RS09865 0.66 -0.3 2,096,571 - ABZR87_RS09865 0.66 +0.3 2,096,571 - ABZR87_RS09865 0.66 +0.0 2,096,648 + ABZR87_RS09865 0.85 +0.4 2,096,802 + -0.4 2,096,803 - -0.8 2,096,814 - -0.5 2,096,855 + +0.5 2,096,906 + -0.3 2,096,907 - +0.8 2,096,907 - -0.4 2,096,954 + -1.1 2,097,053 + ABZR87_RS09870 0.17 +0.3 2,097,086 + ABZR87_RS09870 0.20 +0.2 2,097,126 - ABZR87_RS09870 0.23 -0.5 2,097,137 + ABZR87_RS09870 0.24 +1.0 2,097,138 - ABZR87_RS09870 0.24 -1.2 2,097,227 + ABZR87_RS09870 0.32 +0.5 2,097,227 + ABZR87_RS09870 0.32 -0.3 2,097,227 + ABZR87_RS09870 0.32 -0.0 2,097,227 + ABZR87_RS09870 0.32 +0.5 2,097,227 + ABZR87_RS09870 0.32 -0.1 2,097,228 - ABZR87_RS09870 0.32 -0.4 2,097,230 + ABZR87_RS09870 0.32 +0.2 2,097,230 + ABZR87_RS09870 0.32 +0.3 2,097,233 + ABZR87_RS09870 0.32 +0.3 2,097,234 - ABZR87_RS09870 0.32 +0.3
Or see this region's nucleotide sequence