Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14885

Experiment: LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14880 and BWI76_RS14885 are separated by 16 nucleotidesBWI76_RS14885 and BWI76_RS14890 are separated by 20 nucleotides BWI76_RS14880: BWI76_RS14880 - putative fructose-bisphosphate aldolase, class 1, at 3,118,323 to 3,119,111 _RS14880 BWI76_RS14885: BWI76_RS14885 - putative glycerol uptake operon antiterminator, at 3,119,128 to 3,119,679 _RS14885 BWI76_RS14890: BWI76_RS14890 - carbohydrate kinase, at 3,119,700 to 3,121,238 _RS14890 Position (kb) 3119 3120Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3118.245 kb on + strandat 3118.245 kb on + strandat 3118.254 kb on + strandat 3118.321 kb on - strandat 3118.386 kb on - strandat 3118.390 kb on - strandat 3118.444 kb on + strand, within BWI76_RS14880at 3118.477 kb on - strand, within BWI76_RS14880at 3118.477 kb on - strand, within BWI76_RS14880at 3118.477 kb on - strand, within BWI76_RS14880at 3118.477 kb on - strand, within BWI76_RS14880at 3118.479 kb on + strand, within BWI76_RS14880at 3118.479 kb on + strand, within BWI76_RS14880at 3118.536 kb on + strand, within BWI76_RS14880at 3118.544 kb on - strand, within BWI76_RS14880at 3118.544 kb on - strand, within BWI76_RS14880at 3118.557 kb on - strand, within BWI76_RS14880at 3118.635 kb on + strand, within BWI76_RS14880at 3118.643 kb on - strand, within BWI76_RS14880at 3118.651 kb on - strand, within BWI76_RS14880at 3118.658 kb on - strand, within BWI76_RS14880at 3118.685 kb on + strand, within BWI76_RS14880at 3118.764 kb on + strand, within BWI76_RS14880at 3118.882 kb on - strand, within BWI76_RS14880at 3118.969 kb on + strand, within BWI76_RS14880at 3118.969 kb on + strand, within BWI76_RS14880at 3118.971 kb on + strand, within BWI76_RS14880at 3118.971 kb on + strand, within BWI76_RS14880at 3118.971 kb on + strand, within BWI76_RS14880at 3118.975 kb on - strand, within BWI76_RS14880at 3118.976 kb on + strand, within BWI76_RS14880at 3118.977 kb on - strand, within BWI76_RS14880at 3118.977 kb on - strand, within BWI76_RS14880at 3118.977 kb on - strand, within BWI76_RS14880at 3118.979 kb on - strand, within BWI76_RS14880at 3118.984 kb on - strand, within BWI76_RS14880at 3118.990 kb on - strandat 3119.008 kb on + strand, within BWI76_RS14880at 3119.008 kb on + strand, within BWI76_RS14880at 3119.046 kb on + strandat 3119.046 kb on + strandat 3119.046 kb on + strandat 3119.054 kb on - strandat 3119.054 kb on - strandat 3119.054 kb on - strandat 3119.077 kb on - strandat 3119.089 kb on + strandat 3119.096 kb on - strandat 3119.096 kb on - strandat 3119.103 kb on - strandat 3119.104 kb on - strandat 3119.105 kb on + strandat 3119.105 kb on + strandat 3119.105 kb on + strandat 3119.113 kb on - strandat 3119.185 kb on + strand, within BWI76_RS14885at 3119.190 kb on + strand, within BWI76_RS14885at 3119.198 kb on - strand, within BWI76_RS14885at 3119.212 kb on + strand, within BWI76_RS14885at 3119.309 kb on - strand, within BWI76_RS14885at 3119.325 kb on + strand, within BWI76_RS14885at 3119.357 kb on + strand, within BWI76_RS14885at 3119.358 kb on + strand, within BWI76_RS14885at 3119.366 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strandat 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.389 kb on + strand, within BWI76_RS14885at 3119.397 kb on - strandat 3119.397 kb on - strandat 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strandat 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.397 kb on - strand, within BWI76_RS14885at 3119.429 kb on + strand, within BWI76_RS14885at 3119.437 kb on + strand, within BWI76_RS14885at 3119.437 kb on + strand, within BWI76_RS14885at 3119.447 kb on + strand, within BWI76_RS14885at 3119.447 kb on + strand, within BWI76_RS14885at 3119.456 kb on + strand, within BWI76_RS14885at 3119.456 kb on + strand, within BWI76_RS14885at 3119.456 kb on + strand, within BWI76_RS14885at 3119.460 kb on + strand, within BWI76_RS14885at 3119.464 kb on - strandat 3119.484 kb on + strand, within BWI76_RS14885at 3119.492 kb on - strand, within BWI76_RS14885at 3119.503 kb on + strand, within BWI76_RS14885at 3119.521 kb on + strand, within BWI76_RS14885at 3119.537 kb on + strand, within BWI76_RS14885at 3119.567 kb on + strand, within BWI76_RS14885at 3119.602 kb on - strand, within BWI76_RS14885at 3119.607 kb on + strand, within BWI76_RS14885at 3119.650 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.680 kb on + strandat 3119.688 kb on - strandat 3119.688 kb on - strandat 3119.690 kb on - strandat 3119.690 kb on - strandat 3119.723 kb on - strandat 3119.965 kb on - strand, within BWI76_RS14890at 3119.982 kb on + strand, within BWI76_RS14890at 3120.018 kb on + strand, within BWI76_RS14890at 3120.024 kb on - strand, within BWI76_RS14890at 3120.394 kb on - strand, within BWI76_RS14890at 3120.643 kb on + strand, within BWI76_RS14890

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
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3,118,245 + +0.4
3,118,245 + +0.1
3,118,254 + +0.2
3,118,321 - -2.4
3,118,386 - -0.9
3,118,390 - +1.1
3,118,444 + BWI76_RS14880 0.15 +0.1
3,118,477 - BWI76_RS14880 0.20 -1.7
3,118,477 - BWI76_RS14880 0.20 +0.2
3,118,477 - BWI76_RS14880 0.20 -0.2
3,118,477 - BWI76_RS14880 0.20 -2.1
3,118,479 + BWI76_RS14880 0.20 -2.5
3,118,479 + BWI76_RS14880 0.20 +0.1
3,118,536 + BWI76_RS14880 0.27 +1.2
3,118,544 - BWI76_RS14880 0.28 -0.5
3,118,544 - BWI76_RS14880 0.28 +0.6
3,118,557 - BWI76_RS14880 0.30 -0.2
3,118,635 + BWI76_RS14880 0.40 +0.8
3,118,643 - BWI76_RS14880 0.41 +0.1
3,118,651 - BWI76_RS14880 0.42 -1.2
3,118,658 - BWI76_RS14880 0.42 +0.5
3,118,685 + BWI76_RS14880 0.46 +1.5
3,118,764 + BWI76_RS14880 0.56 -0.3
3,118,882 - BWI76_RS14880 0.71 -1.0
3,118,969 + BWI76_RS14880 0.82 +1.6
3,118,969 + BWI76_RS14880 0.82 -2.2
3,118,971 + BWI76_RS14880 0.82 +0.8
3,118,971 + BWI76_RS14880 0.82 +0.3
3,118,971 + BWI76_RS14880 0.82 +1.1
3,118,975 - BWI76_RS14880 0.83 -0.9
3,118,976 + BWI76_RS14880 0.83 -0.1
3,118,977 - BWI76_RS14880 0.83 -0.9
3,118,977 - BWI76_RS14880 0.83 -2.5
3,118,977 - BWI76_RS14880 0.83 -0.7
3,118,979 - BWI76_RS14880 0.83 -0.4
3,118,984 - BWI76_RS14880 0.84 -0.5
3,118,990 - +1.1
3,119,008 + BWI76_RS14880 0.87 -2.8
3,119,008 + BWI76_RS14880 0.87 -1.9
3,119,046 + -0.1
3,119,046 + -0.2
3,119,046 + +0.2
3,119,054 - -0.5
3,119,054 - +1.1
3,119,054 - +1.1
3,119,077 - +0.1
3,119,089 + -1.9
3,119,096 - +0.7
3,119,096 - +2.1
3,119,103 - -1.7
3,119,104 - -0.2
3,119,105 + -0.9
3,119,105 + -0.5
3,119,105 + +0.6
3,119,113 - +0.1
3,119,185 + BWI76_RS14885 0.10 -2.2
3,119,190 + BWI76_RS14885 0.11 -0.1
3,119,198 - BWI76_RS14885 0.13 -1.5
3,119,212 + BWI76_RS14885 0.15 +0.1
3,119,309 - BWI76_RS14885 0.33 +1.1
3,119,325 + BWI76_RS14885 0.36 -0.6
3,119,357 + BWI76_RS14885 0.41 +0.3
3,119,358 + BWI76_RS14885 0.42 -0.4
3,119,366 + BWI76_RS14885 0.43 +0.1
3,119,389 + BWI76_RS14885 0.47 +0.2
3,119,389 + BWI76_RS14885 0.47 +0.2
3,119,389 + BWI76_RS14885 0.47 +0.6
3,119,389 + BWI76_RS14885 0.47 +0.3
3,119,389 + BWI76_RS14885 0.47 -0.3
3,119,389 + BWI76_RS14885 0.47 -1.1
3,119,389 + BWI76_RS14885 0.47 -2.5
3,119,389 + BWI76_RS14885 0.47 -2.1
3,119,389 + BWI76_RS14885 0.47 -0.2
3,119,389 + BWI76_RS14885 0.47 -0.5
3,119,389 + BWI76_RS14885 0.47 -1.0
3,119,389 + BWI76_RS14885 0.47 -0.8
3,119,389 + BWI76_RS14885 0.47 -0.4
3,119,389 + BWI76_RS14885 0.47 -1.2
3,119,389 + BWI76_RS14885 0.47 -0.5
3,119,389 + BWI76_RS14885 0.47 -2.2
3,119,389 + BWI76_RS14885 0.47 +0.1
3,119,389 + BWI76_RS14885 0.47 -0.9
3,119,389 + BWI76_RS14885 0.47 +0.1
3,119,389 + BWI76_RS14885 0.47 -2.1
3,119,389 + BWI76_RS14885 0.47 -0.9
3,119,389 + BWI76_RS14885 0.47 +1.4
3,119,389 + BWI76_RS14885 0.47 +0.0
3,119,389 + BWI76_RS14885 0.47 +0.0
3,119,389 + BWI76_RS14885 0.47 -1.2
3,119,389 + BWI76_RS14885 0.47 -0.0
3,119,389 + BWI76_RS14885 0.47 -1.2
3,119,389 + BWI76_RS14885 0.47 +1.1
3,119,389 + BWI76_RS14885 0.47 +0.7
3,119,389 + BWI76_RS14885 0.47 +1.8
3,119,389 + BWI76_RS14885 0.47 -0.5
3,119,389 + BWI76_RS14885 0.47 -0.9
3,119,389 + BWI76_RS14885 0.47 -0.4
3,119,389 + BWI76_RS14885 0.47 -0.4
3,119,389 + BWI76_RS14885 0.47 +1.4
3,119,389 + BWI76_RS14885 0.47 -0.9
3,119,389 + BWI76_RS14885 0.47 +1.1
3,119,389 + BWI76_RS14885 0.47 +0.1
3,119,389 + +1.9
3,119,389 + BWI76_RS14885 0.47 -0.3
3,119,389 + BWI76_RS14885 0.47 -0.6
3,119,389 + BWI76_RS14885 0.47 -1.1
3,119,389 + BWI76_RS14885 0.47 -1.4
3,119,389 + BWI76_RS14885 0.47 -0.8
3,119,389 + BWI76_RS14885 0.47 -0.5
3,119,389 + BWI76_RS14885 0.47 -1.5
3,119,389 + BWI76_RS14885 0.47 -0.1
3,119,389 + BWI76_RS14885 0.47 +0.1
3,119,389 + BWI76_RS14885 0.47 +0.1
3,119,389 + BWI76_RS14885 0.47 +0.2
3,119,389 + BWI76_RS14885 0.47 +0.1
3,119,389 + BWI76_RS14885 0.47 -1.0
3,119,389 + BWI76_RS14885 0.47 +1.1
3,119,389 + BWI76_RS14885 0.47 +0.2
3,119,389 + BWI76_RS14885 0.47 +0.0
3,119,397 - +0.1
3,119,397 - +1.1
3,119,397 - BWI76_RS14885 0.49 -1.5
3,119,397 - BWI76_RS14885 0.49 -2.2
3,119,397 - BWI76_RS14885 0.49 +1.1
3,119,397 - BWI76_RS14885 0.49 -1.7
3,119,397 - BWI76_RS14885 0.49 +1.1
3,119,397 - BWI76_RS14885 0.49 -0.5
3,119,397 - BWI76_RS14885 0.49 -2.1
3,119,397 - BWI76_RS14885 0.49 -2.1
3,119,397 - BWI76_RS14885 0.49 +0.4
3,119,397 - BWI76_RS14885 0.49 +1.1
3,119,397 - BWI76_RS14885 0.49 -0.9
3,119,397 - +0.1
3,119,397 - BWI76_RS14885 0.49 +1.1
3,119,397 - BWI76_RS14885 0.49 +0.9
3,119,397 - BWI76_RS14885 0.49 +1.1
3,119,397 - BWI76_RS14885 0.49 -0.5
3,119,429 + BWI76_RS14885 0.55 -0.5
3,119,437 + BWI76_RS14885 0.56 +0.1
3,119,437 + BWI76_RS14885 0.56 -0.1
3,119,447 + BWI76_RS14885 0.58 -1.0
3,119,447 + BWI76_RS14885 0.58 +1.1
3,119,456 + BWI76_RS14885 0.59 -0.4
3,119,456 + BWI76_RS14885 0.59 -0.2
3,119,456 + BWI76_RS14885 0.59 -0.4
3,119,460 + BWI76_RS14885 0.60 -0.0
3,119,464 - -0.5
3,119,484 + BWI76_RS14885 0.64 -0.9
3,119,492 - BWI76_RS14885 0.66 +0.1
3,119,503 + BWI76_RS14885 0.68 +0.7
3,119,521 + BWI76_RS14885 0.71 -2.1
3,119,537 + BWI76_RS14885 0.74 -1.1
3,119,567 + BWI76_RS14885 0.80 -0.8
3,119,602 - BWI76_RS14885 0.86 +0.1
3,119,607 + BWI76_RS14885 0.87 -0.5
3,119,650 + +0.1
3,119,680 + +0.1
3,119,680 + +0.3
3,119,680 + -0.6
3,119,680 + -0.0
3,119,680 + +0.2
3,119,680 + -0.1
3,119,680 + +0.8
3,119,680 + -1.5
3,119,680 + -0.0
3,119,680 + -0.1
3,119,680 + -0.8
3,119,680 + -0.1
3,119,680 + -0.5
3,119,680 + +3.7
3,119,680 + -2.8
3,119,680 + +1.0
3,119,680 + -0.1
3,119,680 + +2.1
3,119,680 + -1.9
3,119,680 + -1.2
3,119,680 + -0.3
3,119,688 - -0.5
3,119,688 - -1.5
3,119,690 - -0.9
3,119,690 - -0.9
3,119,723 - -1.4
3,119,965 - BWI76_RS14890 0.17 -0.1
3,119,982 + BWI76_RS14890 0.18 +0.3
3,120,018 + BWI76_RS14890 0.21 -0.1
3,120,024 - BWI76_RS14890 0.21 -2.4
3,120,394 - BWI76_RS14890 0.45 +0.1
3,120,643 + BWI76_RS14890 0.61 +1.0

Or see this region's nucleotide sequence