Experiment: LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03160 and BWI76_RS03165 are separated by 768 nucleotides BWI76_RS03165 and BWI76_RS03170 are separated by 17 nucleotides BWI76_RS03170 and BWI76_RS03175 overlap by 4 nucleotides
BWI76_RS03160: BWI76_RS03160 - hypothetical protein, at 651,430 to 653,463
_RS03160
BWI76_RS03165: BWI76_RS03165 - phage polarity suppression protein, at 654,232 to 654,798
_RS03165
BWI76_RS03170: BWI76_RS03170 - hypothetical protein, at 654,816 to 655,061
_RS03170
BWI76_RS03175: BWI76_RS03175 - hypothetical protein, at 655,058 to 655,795
_RS03175
Position (kb) 654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 653.265 kb on + strand at 653.276 kb on + strand at 653.403 kb on + strand at 653.456 kb on + strand at 653.456 kb on + strand at 653.509 kb on - strand at 653.509 kb on - strand at 653.621 kb on + strand at 653.621 kb on + strand at 653.621 kb on + strand at 653.621 kb on + strand at 653.621 kb on + strand at 653.621 kb on + strand at 653.621 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.629 kb on - strand at 653.629 kb on - strand at 653.659 kb on + strand at 653.664 kb on + strand at 653.667 kb on + strand at 653.667 kb on + strand at 653.674 kb on + strand at 653.674 kb on + strand at 653.682 kb on - strand at 653.735 kb on - strand at 653.736 kb on + strand at 653.736 kb on + strand at 653.736 kb on + strand at 653.736 kb on + strand at 653.736 kb on + strand at 653.736 kb on + strand at 653.736 kb on + strand at 653.744 kb on - strand at 653.744 kb on - strand at 653.744 kb on - strand at 653.744 kb on - strand at 653.744 kb on - strand at 653.744 kb on - strand at 653.744 kb on - strand at 653.749 kb on - strand at 653.770 kb on + strand at 653.770 kb on + strand at 653.778 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.783 kb on + strand at 653.783 kb on + strand at 653.783 kb on + strand at 653.788 kb on + strand at 653.788 kb on + strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.791 kb on - strand at 653.791 kb on - strand at 653.792 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.796 kb on - strand at 653.796 kb on - strand at 653.798 kb on + strand at 653.801 kb on - strand at 653.801 kb on - strand at 653.808 kb on - strand at 653.871 kb on + strand at 653.878 kb on + strand at 653.878 kb on + strand at 653.878 kb on - strand at 653.881 kb on + strand at 653.889 kb on - strand at 653.889 kb on - strand at 653.892 kb on + strand at 653.892 kb on + strand at 653.892 kb on + strand at 653.892 kb on + strand at 653.900 kb on - strand at 653.900 kb on - strand at 653.900 kb on - strand at 653.900 kb on - strand at 653.900 kb on - strand at 653.900 kb on - strand at 653.900 kb on - strand at 653.905 kb on - strand at 653.907 kb on + strand at 653.907 kb on + strand at 653.914 kb on + strand at 653.915 kb on - strand at 653.915 kb on - strand at 653.915 kb on - strand at 653.922 kb on - strand at 653.923 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.943 kb on - strand at 653.943 kb on - strand at 653.943 kb on - strand at 653.943 kb on - strand at 653.946 kb on - strand at 653.948 kb on - strand at 653.948 kb on - strand at 653.956 kb on - strand at 653.972 kb on - strand at 653.977 kb on - strand at 653.982 kb on - strand at 653.982 kb on - strand at 653.982 kb on - strand at 653.982 kb on - strand at 654.249 kb on - strand at 654.249 kb on - strand at 654.321 kb on + strand, within BWI76_RS03165 at 654.416 kb on - strand, within BWI76_RS03165 at 654.420 kb on + strand, within BWI76_RS03165 at 654.436 kb on + strand, within BWI76_RS03165 at 654.518 kb on - strand, within BWI76_RS03165 at 654.536 kb on - strand, within BWI76_RS03165 at 654.663 kb on + strand, within BWI76_RS03165 at 654.663 kb on + strand, within BWI76_RS03165 at 654.663 kb on + strand, within BWI76_RS03165 at 654.671 kb on - strand, within BWI76_RS03165 at 654.671 kb on - strand, within BWI76_RS03165 at 654.674 kb on + strand, within BWI76_RS03165 at 654.682 kb on - strand, within BWI76_RS03165 at 654.807 kb on - strand at 654.843 kb on + strand, within BWI76_RS03170 at 654.932 kb on + strand, within BWI76_RS03170 at 654.940 kb on - strand, within BWI76_RS03170 at 654.940 kb on - strand, within BWI76_RS03170 at 655.324 kb on + strand, within BWI76_RS03175 at 655.344 kb on - strand, within BWI76_RS03175 at 655.377 kb on - strand, within BWI76_RS03175 at 655.421 kb on - strand, within BWI76_RS03175 at 655.481 kb on - strand, within BWI76_RS03175 at 655.714 kb on + strand, within BWI76_RS03175 at 655.714 kb on + strand, within BWI76_RS03175 at 655.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL remove 653,265 + +1.3 653,276 + -0.3 653,403 + -0.7 653,456 + -1.1 653,456 + -0.4 653,509 - -2.0 653,509 - -0.3 653,621 + -0.8 653,621 + +0.4 653,621 + -1.0 653,621 + +1.7 653,621 + -0.3 653,621 + +1.3 653,621 + -2.6 653,626 + -1.0 653,626 + -0.3 653,626 + -2.4 653,626 + -1.5 653,626 + +0.0 653,626 + -1.0 653,626 + -0.1 653,626 + +0.2 653,629 - -0.4 653,629 - -2.8 653,659 + +0.3 653,664 + +0.6 653,667 + -0.3 653,667 + -1.1 653,674 + +2.0 653,674 + -1.3 653,682 - +0.7 653,735 - -0.3 653,736 + -0.3 653,736 + +0.6 653,736 + -1.6 653,736 + -0.0 653,736 + -1.0 653,736 + +1.5 653,736 + -1.2 653,744 - -1.7 653,744 - +0.5 653,744 - +1.4 653,744 - -0.3 653,744 - +0.3 653,744 - -1.5 653,744 - +1.3 653,749 - -0.8 653,770 + -0.3 653,770 + +0.1 653,778 + -1.0 653,782 + +1.3 653,782 + -0.7 653,782 + +1.3 653,782 + +1.3 653,782 + +0.8 653,782 + -0.7 653,782 + +0.3 653,782 + -0.7 653,783 + +0.3 653,783 + +0.5 653,783 + -1.3 653,788 + +0.7 653,788 + +0.3 653,790 - +0.7 653,790 - +0.3 653,790 - -1.4 653,790 - -0.5 653,790 - -1.5 653,790 - -0.2 653,790 - +2.3 653,790 - +0.7 653,790 - -2.3 653,790 - -0.1 653,790 - +0.8 653,791 - -0.7 653,791 - +0.3 653,792 + +0.2 653,793 + +0.5 653,793 + -1.5 653,793 + -0.2 653,793 + +0.5 653,793 + -2.5 653,793 + +1.3 653,793 + +0.6 653,793 + -1.0 653,796 - -0.3 653,796 - -0.1 653,798 + -1.7 653,801 - +0.3 653,801 - +0.7 653,808 - -1.3 653,871 + -1.8 653,878 + -2.0 653,878 + -0.4 653,878 - -1.4 653,881 + +0.4 653,889 - -1.0 653,889 - +0.7 653,892 + +1.3 653,892 + +1.7 653,892 + -0.7 653,892 + -0.3 653,900 - +0.6 653,900 - +1.3 653,900 - -1.7 653,900 - -1.5 653,900 - -0.6 653,900 - -0.7 653,900 - -0.8 653,905 - +1.4 653,907 + +0.3 653,907 + -0.7 653,914 + +0.5 653,915 - +0.7 653,915 - -1.7 653,915 - -0.3 653,922 - +0.3 653,923 + +0.7 653,925 + +0.2 653,925 + +0.1 653,925 + -0.8 653,925 + -1.3 653,925 + -2.7 653,925 + -0.0 653,925 + -2.7 653,925 + -0.5 653,925 + +0.3 653,925 + -1.9 653,925 + -1.0 653,933 - +1.3 653,933 - -1.2 653,933 - -0.9 653,933 - -2.1 653,933 - -0.0 653,933 - -0.7 653,933 - -0.7 653,933 - +2.6 653,933 - +0.3 653,933 - -0.1 653,933 - +0.7 653,933 - +0.7 653,933 - -0.3 653,933 - +0.3 653,943 - -0.4 653,943 - -0.4 653,943 - +0.3 653,943 - +0.8 653,946 - -1.0 653,948 - -2.0 653,948 - +1.0 653,956 - +0.6 653,972 - +0.6 653,977 - -0.5 653,982 - +2.0 653,982 - -0.2 653,982 - +2.9 653,982 - -1.3 654,249 - -1.0 654,249 - +1.0 654,321 + BWI76_RS03165 0.16 -0.5 654,416 - BWI76_RS03165 0.32 -0.7 654,420 + BWI76_RS03165 0.33 +0.6 654,436 + BWI76_RS03165 0.36 +0.2 654,518 - BWI76_RS03165 0.50 -0.5 654,536 - BWI76_RS03165 0.54 -0.9 654,663 + BWI76_RS03165 0.76 -0.7 654,663 + BWI76_RS03165 0.76 -1.3 654,663 + BWI76_RS03165 0.76 +0.3 654,671 - BWI76_RS03165 0.77 -1.5 654,671 - BWI76_RS03165 0.77 -1.7 654,674 + BWI76_RS03165 0.78 -0.1 654,682 - BWI76_RS03165 0.79 -1.2 654,807 - -0.8 654,843 + BWI76_RS03170 0.11 -0.3 654,932 + BWI76_RS03170 0.47 -0.4 654,940 - BWI76_RS03170 0.50 +0.1 654,940 - BWI76_RS03170 0.50 -2.7 655,324 + BWI76_RS03175 0.36 +0.1 655,344 - BWI76_RS03175 0.39 -0.7 655,377 - BWI76_RS03175 0.43 +0.4 655,421 - BWI76_RS03175 0.49 -1.3 655,481 - BWI76_RS03175 0.57 +0.2 655,714 + BWI76_RS03175 0.89 -0.1 655,714 + BWI76_RS03175 0.89 -0.5 655,733 + +0.2
Or see this region's nucleotide sequence