Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19205

Experiment: LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19195 and BWI76_RS19200 overlap by 4 nucleotidesBWI76_RS19200 and BWI76_RS19205 overlap by 1 nucleotidesBWI76_RS19205 and BWI76_RS19210 are separated by 201 nucleotides BWI76_RS19195: BWI76_RS19195 - nickel ABC transporter permease, at 3,995,460 to 3,996,306 _RS19195 BWI76_RS19200: BWI76_RS19200 - binding-protein-dependent transport system inner membrane protein, at 3,996,303 to 3,997,241 _RS19200 BWI76_RS19205: BWI76_RS19205 - putative proline iminopeptidase, at 3,997,241 to 3,998,140 _RS19205 BWI76_RS19210: BWI76_RS19210 - LuxR family transcriptional regulator, at 3,998,342 to 3,999,094 _RS19210 Position (kb) 3997 3998 3999Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3996.374 kb on + strandat 3996.433 kb on + strand, within BWI76_RS19200at 3996.586 kb on + strand, within BWI76_RS19200at 3996.654 kb on + strand, within BWI76_RS19200at 3996.968 kb on + strand, within BWI76_RS19200at 3997.091 kb on - strand, within BWI76_RS19200at 3997.807 kb on + strand, within BWI76_RS19205at 3997.906 kb on + strand, within BWI76_RS19205at 3997.948 kb on + strand, within BWI76_RS19205at 3998.075 kb on + strandat 3998.542 kb on + strand, within BWI76_RS19210at 3998.740 kb on + strand, within BWI76_RS19210at 3998.879 kb on + strand, within BWI76_RS19210at 3999.134 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
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3,996,374 + +1.1
3,996,433 + BWI76_RS19200 0.14 +0.8
3,996,586 + BWI76_RS19200 0.30 -0.4
3,996,654 + BWI76_RS19200 0.37 +0.8
3,996,968 + BWI76_RS19200 0.71 -3.6
3,997,091 - BWI76_RS19200 0.84 -2.9
3,997,807 + BWI76_RS19205 0.63 -2.8
3,997,906 + BWI76_RS19205 0.74 -0.3
3,997,948 + BWI76_RS19205 0.79 -1.3
3,998,075 + +0.4
3,998,542 + BWI76_RS19210 0.27 -4.4
3,998,740 + BWI76_RS19210 0.53 +0.4
3,998,879 + BWI76_RS19210 0.71 -0.6
3,999,134 + -0.4

Or see this region's nucleotide sequence